The Sequence Read Archive

• Advancing Cardiovascular Research With Single-Cell and Spatial Transcriptomics

  2026 Circulation Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  12

  citations
• Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses

  2025 Proceedings of the National Academy of Sciences article Agricultural and Biological Sciences Animal Virus Infections Studies Open access

  21

  citations
• Optical genome and epigenome mapping of clear cell renal cell carcinoma

  2025 NAR Cancer article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access

  4

  citations
• RNA genome expansion up to 64 kb in nidoviruses is host constrained and associated with new modes of replicase expression

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Animal Virus Infections Studies Open access

  4

  citations
• Multiple graphical views for automatically generating SQL for the MycoDiversity DB; making fungal biodiversity studies accessible

  2024 Biodiversity Data Journal article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access

  0

  citations
• Deep mining of the Sequence Read Archive reveals major genetic innovations in coronaviruses and other nidoviruses of aquatic vertebrates

  2024 PLoS Pathogens article Immunology and Microbiology Aquaculture disease management and microbiota Open access

  44

  citations
• Special considerations for studies of extracellular vesicles from parasitic helminths: A community‐led roadmap to increase rigour and reproducibility

  2023 Journal of Extracellular Vesicles article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access

  59

  citations
• Optical Genome and Epigenome Mapping of Clear Cell Renal Cell Carcinoma

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access

  6

  citations
• Deep mining of the Sequence Read Archive reveals bipartite coronavirus genomes and inter-family Spike glycoprotein recombination

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Animal Virus Infections Studies Open access

  10

  citations
• The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns

  2021 Frontiers in Plant Science article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  35

  citations
• Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning

  2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent

  179

  citations
• Genetic Variation and Hybridization in Evolutionary Radiations of Cichlid Fishes

  2020 Annual Review of Animal Biosciences review Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access

  69

  citations
• The sugarcane and sorghum kinomes: insights into evolutionary expansion and diversification

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  0

  citations
• The single-cell eQTLGen consortium

  2020 eLife article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access

  222

  citations
• Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB)

  2020 Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access

  10

  citations

15 results