Inferring Correlation Networks from Genomic Survey Data

• What Co‐Occurrence Networks Can and Cannot Tell Us About Soil Ecology

  2026 European Journal of Soil Science article Environmental Science Microbial Community Ecology and Physiology

  1

  citations
• Mediterranean diet component oleic acid decreases systemic impact of periodontal Porphyromonas gingivalis-infection in age: addressing role of stress resistance and microbiome

  2025 npj Aging article Dentistry Oral microbiology and periodontitis research Open access

  6

  citations
• Unveiling the ecological processes driving soil and lichen microbiome assembly along an urbanization gradient

  2025 npj Biofilms and Microbiomes article Environmental Science Microbial Community Ecology and Physiology Open access

  9

  citations
• A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies

  2024 Genome biology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  44

  citations
• The use of living labs to advance agro-ecological theory in the transition towards sustainable land use: A tale of two polders

  2024 Environmental Impact Assessment Review article Environmental Science Land Use and Ecosystem Services Open access

  20

  citations
• Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

  2023 Environmental Microbiome article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  71

  citations
• Interkingdom interaction: the soil isopod Porcellio scaber stimulates the methane-driven bacterial and fungal interaction

  2023 ISME Communications article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  10

  citations
• Wavelet clustering analysis as a tool for characterizing community structure in the human microbiome

  2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  5

  citations
• Capturing the dynamics of microbial interactions through individual-specific networks

  2023 Frontiers in Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  13

  citations
• An integrated tumor, immune and microbiome atlas of colon cancer

  2023 Nature Medicine article Medicine Cancer Immunotherapy and Biomarkers Open access

  215

  citations
• Capturing the dynamics of microbiomes using individual-specific networks

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  0

  citations
• Additional file 2 of Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

  2023 Figshare dataset Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  0

  citations
• Bacterial and fungal co-occurrence patterns in agricultural soils amended with compost and bokashi

  2022 Soil Biology and Biochemistry article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  36

  citations
• Species abundance correlations carry limited information about microbial network interactions

  2022 PLoS Computational Biology article Environmental Science Microbial Community Ecology and Physiology Open access

  33

  citations
• Best practices in metabarcoding of fungi: From experimental design to results

  2022 Molecular Ecology article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access

  345

  citations
• Influence of probiotic supplementation on the developing microbiota in human preterm neonates

  2020 Gut Microbes article Nursing Infant Nutrition and Health Open access

  46

  citations
• Dynamics of active potential bacterial and fungal interactions in the assimilation of acidobacterial EPS in soil

  2020 Soil Biology and Biochemistry article Environmental Science Microbial Community Ecology and Physiology Open access

  40

  citations
• Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists

  2020 FEMS Microbiology Ecology article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  136

  citations

18 results