ViennaRNA Package 2.0

• Polymerase trapping as the mechanism of H5 highly pathogenic avian influenza virus genesis

  2026 Science article Medicine Influenza Virus Research Studies Open access

  2

  citations
• Phylogenetic Analysis of NEAT1 and MALAT1 Long Non-Coding RNAs Highlights Structure–Function Relationships in Paraspeckle Biology

  2025 Molecular Biology and Evolution article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  0

  citations
• Roles for the long non-coding RNA Pax6os1/PAX6-AS1 in pancreatic beta cell function

  2024 iScience article Medicine Pancreatic function and diabetes Open access

  3

  citations
• Phylogenetic Study of Long Non-Coding RNA NEAT1 and MALAT1 to Infer Structural-Functional Connection

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  0

  citations
• Optimizing interleukin-6 and 8 expression, clarification and purification in plant cell packs and plants for application in advanced therapy medicinal products and cellular agriculture

  2024 Journal of Biotechnology article Biochemistry, Genetics and Molecular Biology Transgenic Plants and Applications Open access

  11

  citations
• Transient RNA structures underlie highly pathogenic avian influenza virus genesis

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Influenza Virus Research Studies Open access

  3

  citations
• Refining the transcriptional landscapes for distinct clades of virulent phages infecting Pseudomonas aeruginosa

  2024 microLife article Environmental Science Bacteriophages and microbial interactions Open access

  13

  citations
• Refining the transcriptional landscapes for distinct clades of virulent phages infecting pseudomonas aeruginosa

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access

  1

  citations
• Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements

  2023 NAR Genomics and Bioinformatics article Agricultural and Biological Sciences Plant Molecular Biology Research Open access

  12

  citations
• Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)

  2023 Journal of Crustacean Biology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  4

  citations
• Mix and Match: Promoters and Terminators for Tuning Gene Expression in the Methylotrophic Yeast Ogataea polymorpha

  2022 Frontiers in Bioengineering and Biotechnology article Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access

  16

  citations
• SHAPE-guided RNA structure homology search and motif discovery

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access

  23

  citations
• Genome-scale deconvolution of RNA structure ensembles

  2021 Nature Methods article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 1 patent

  131

  citations
• Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

  2020 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 4 patents

  323

  citations
• Roles for the long non-coding RNA Pax6os1 / PAX6-AS1 in pancreatic beta cell identity and function

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access

  6

  citations

15 results