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Transcriptome, metabolome and suppressor analysis reveal an essential role for the ubiquitin-proteasome system in seedling chloroplast development2022 BMC Plant Biology article Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Prabhavathi Talloji, Lilian Nehlin, Bruno Hüttel, Nikola Winter, Martin Černý, Hana Dufková, +9 more
3citations -
Hybrid Chains: A Collaboration of Ubiquitin and Ubiquitin-Like Modifiers Introducing Cross-Functionality to the Ubiquitin Code2020 Frontiers in Chemistry article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
David A. Pérez Berrocal, Katharina F. Witting, Huib Ovaa, Monique P. C. Mulder
58citations -
Activity-based protein profiling reveals both canonical and novel ubiquitin pathway enzymes in Plasmodium2025 PLoS Pathogens article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Cameron L. C. Smith, Mohsen Hajisadeghian, Gerbrand J. van der Heden van Noort, Michael J. Deery, Adán Pinto-Fernández, Benedikt Mathias Kessler, +1 more
2citations -
Non-functional ubiquitin C-terminal hydrolase L1 drives podocyte injury through impairing proteasomes in autoimmune glomerulonephritis2023 Nature Communications article Medicine Renal Diseases and Glomerulopathies Open access cited by 2 patents
Julia Reichelt, Wiebke Sachs, Sarah Frömbling, Julia Fehlert, Maja Studencka‐Turski, Desirée Loreth, +14 more
21citations -
Development of Tyrphostin Analogues to Study Inhibition of the Mycobacterium tuberculosis Pup Proteasome System**2021 ChemBioChem article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Guido V. Janssen, Susan Zhang, Remco Merkx, Christa Schiesswohl, Champak Chatterjee, K. Heran Darwin, +3 more
13citations -
Deciphering non-canonical ubiquitin signaling: biology and methodology2024 Frontiers in Molecular Biosciences article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Nila K. van Overbeek, Tim Aguirre, Gerbrand J. van der Heden van Noort, Blagoy Blagoev, Alfred C.O. Vertegaal
11citations -
Strategy for Development of Site-Specific Ubiquitin Antibodies2020 Frontiers in Chemistry article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Ila van Kruijsbergen, Monique P. C. Mulder, Michael Uckelmann, Tibor van Welsem, John de Widt, Aldo Spanjaard, +4 more
12citations -
Inhibiting UCH-L5: Rational Design of a Cyclic Ubiquitin-Based Peptide Inhibitor2022 Frontiers in Molecular Biosciences article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Dharjath S. Hameed, Huib Ovaa, Gerbrand J. van der Heden van Noort, Ayşegül Sapmaz
2citations -
A functional screen for bacterial ubiquitin regulation identifies an unusual Pseudomonas aeruginosa E3 ligase2026 The EMBO Journal article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Cameron G. Roberts, Supender Kaur, Shun‐Je Bhark, Aaron J. Ogden, Michael E. Divine, Gus D. Warren, +9 more
0citations -
Specificity and recognition of the ADP-ribosyl-ubiquitin modification in the DNA damage response2026 PLoS Biology article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Chatrin Chatrin, Kang Zhu, Michael D. R. Simmons, Lucy Maginn, Kira Schützenhofer, Yang Lu, +9 more
0citations -
A Pro‐Fluorescent Ubiquitin‐Based Probe to Monitor Cysteine‐Based E3 Ligase Activity2023 Angewandte Chemie International Edition article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
David A. Pérez Berrocal, Thimmalapura M. Vishwanatha, Daniel Horn‐Ghetko, J. Josephine Botsch, Laura A. Hehl, Sebastian Kostrhon, +6 more
4citations -
A Pro‐Fluorescent Ubiquitin‐Based Probe to Monitor Cysteine‐Based E3 Ligase Activity2023 Angewandte Chemie article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
David A. Pérez Berrocal, Thimmalapura M. Vishwanatha, Daniel Horn‐Ghetko, J. Josephine Botsch, Laura A. Hehl, Sebastian Kostrhon, +6 more
0citations -
Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Fredrik Trulsson, Vyacheslav Akimov, Mihaela Robu, Nila K. van Overbeek, David A. Pérez Berrocal, Rashmi G. Shah, +4 more
96citations -
Protein degrons and degradation: Exploring substrate recognition and pathway selection in plants2024 The Plant Cell article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Erika Isono, Jianming Li, Pablo Pulido, Wei Siao, Steven H. Spoel, Zhishuo Wang, +2 more
26citations -
A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode2025 Molecular Cell article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Thomas Hermanns, Susanne Kolek, Matthias Uthoff, Richard A. de Heiden, Monique P. C. Mulder, Ulrich Baumann, +1 more
9citations -
The Plasmodium falciparum RING Finger Protein PfRNF1 Forms an Interaction Network with Regulators of Sexual Development2025 International Journal of Molecular Sciences article Medicine Malaria Research and Control Open access
Afia Farrukh, Sherihan Musa, Ute Distler, Stefan Tenzer, Gabriele Pradel, Che Julius Ngwa
5citations -
KLHL24 mutation drives intermediate filament degradation, mitochondrial dysfunction and fibrosis in heart failure patients2025 Cardiovascular Research article Biochemistry, Genetics and Molecular Biology Skin and Cellular Biology Research
Veronika Ramovš, H. Sophia Chen, Rayman T.N. Tjokrodirijo, Peter A. van Veelen, Aat A. Mulder, Roman I. Koning, +13 more
1citations -
Modic changes are associated with activation of intense inflammatory and host defense response pathways – molecular insights from proteomic analysis of human intervertebral discs
Shanmuganathan Rajasekaran, Dilip Chand Raja Soundararajan, Sharon Miracle Nayagam, Chitraa Tangavel, M. Raveendran, B. T. Pushpa, +4 more
35citations -
Modic changes are associated with activation of intense inflammatory and host defense response pathways -- molecular insights from proteomic analysis of human intervertebral discs
Shanmuganathan Rajasekaran, Dilip Chand Raja, Sharon Miracle Nayagam, Chitraa Tangavel, M. Raveendran, B. T. Pushpa, +3 more
1citations