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snRNA-seq analysis in multinucleated myogenic FSHD cells identifies heterogeneous FSHD transcriptome signatures associated with embryonic-like program activation and oxidative stress-induced apoptosis2023 Human Molecular Genetics article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Dongxu Zheng, Annelot Wondergem, Susan L. Kloet, Iris M. Willemsen, Judit Balog, Stephen J. Tapscott, +3 more
15citations -
Transcriptome-Wide Prediction and Measurement of Combined Effects Induced by Chemical Mixture Exposure in Zebrafish Embryos2021 Environmental Health Perspectives article Environmental Science Environmental Toxicology and Ecotoxicology Open access
Andreas Schüttler, Gianina Jakobs, J.M. Fix, Martin Krayer Von Krauss, Janet Krüger, David Leuthold, +2 more
8citations -
GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
Eye-Transcriptome and Genome-Wide Sequencing for Scolecophidia: Implications for Inferring the Visual System of the Ancestral Snake2021 Genome Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
David J. Gower, James F. Fleming, Davide Pisani, Freek J. Vonk, Harald M. I. Kerkkamp, Leo Peichl, +6 more
27citations -
Substantiate a read-across hypothesis by using transcriptome data—A case study on volatile diketones2023 Frontiers in Toxicology article Biochemistry, Genetics and Molecular Biology Carcinogens and Genotoxicity Assessment Open access
Matthias M. Wehr, Walter Zobl, Jeannette Koschmann, Britta Anna Kühne, Tanja Hansen, Jan Knebel, +5 more
7citations -
MC38 colorectal tumor cell lines from two different sources display substantial differences in transcriptome, mutanome and neoantigen expression2023 Frontiers in Immunology article Medicine Cancer Immunotherapy and Biomarkers Open access cited by 5 patents
Barbara Schrörs, Brett J. Hos, Ikra Yildiz, Martin Löwer, Franziska Lang, Christoph Holtsträter, +4 more
34citations -
Elucidating mechano-pathology of osteoarthritis: transcriptome-wide differences in mechanically stressed aged human cartilage explants2021 Arthritis Research & Therapy article Medicine Osteoarthritis Treatment and Mechanisms Open access
Evelyn Houtman, Margo Tuerlings, Janne Riechelman, H. Eka D. Suchiman, Robert J. P. van der Wal, Rob G. H. H. Nelissen, +4 more
33citations -
Facioscapulohumeral dystrophy transcriptome signatures correlate with different stages of disease and are marked by different MRI biomarkers2022 Scientific Reports article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access cited by 2 patents
Anita van den Heuvel, Saskia Lassche, Karlien Mul, David San León, Arend Heerschap, Benno Küsters, +4 more
32citations -
Molecular Signature of 18F-FDG PET Biomarkers in Newly Diagnosed Multiple Myeloma Patients: A Genome-Wide Transcriptome Analysis from the CASSIOPET Study2022 Journal of Nuclear Medicine article Medicine Multiple Myeloma Research and Treatments Open access
Jean-Baptiste Alberge, Françoise Kraeber‐Bodéré, Bastien Jamet, Cyrille Touzeau, Hélène Caillon, Soraya Wuillème, +13 more
19citations -
A global survey of the transcriptome of the opium poppy (Papaver somniferum) based on single‐molecule long‐read isoform sequencing2022 The Plant Journal article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies
Tun Xu, Xiaofei Yang, Yanyan Jia, Zihang Li, Guangbo Tang, Xiujuan Li, +5 more
13citations -
Whole blood transcriptome in long-COVID patients reveals association with lung function and immune response2024 Journal of Allergy and Clinical Immunology article Medicine Long-Term Effects of COVID-19 Open access cited by 2 patents
Jelle M. Blankestijn, Nadia Baalbaki, Somayeh Bazdar, Inés Beekers, Rosanne J.H.C.G. Beijers, Joop P. van den Bergh, +17 more
5citations -
Bronchial Thermoplasty Induced Changes in Blood Transcriptome Profile of Patients with Severe Asthma2026 International Journal of Molecular Sciences article Medicine Asthma and respiratory diseases Open access
Sofi M. Vassileva, Jelle M. Blankestijn, Annika W.M. Goorsenberg, Shahriyar Shahbazi Khamas, Stefania Principe, Mahmoud I. Abdel‐Aziz, +8 more
0citations -
Transcriptome‐wide association study of breast cancer risk by estrogen‐receptor status2020 Genetic Epidemiology article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Helian Feng, Alexander Gusev, Bogdan Paşaniuc, Lang Wu, Jirong Long, Zomoroda Abu-Full, +90 more
45citations -
Transcriptome-Based Identification and Functional Characterization of NAC Transcription Factors Responsive to Drought Stress in Capsicum annuum L.2021 Frontiers in Genetics article Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Dionís Borràs, Lorenzo Barchi, Karina Schulz, Andrea Moglia, Alberto Acquadro, Iman Kamranfar, +2 more
24citations -
Progressive changes in phenotype, transcriptome and proliferation capacity characterise continued maturation and migration of intestinal cDCs in homeostasis2025 Nature Communications article Immunology and Microbiology Immunotherapy and Immune Responses Open access
Fabian Tobias Hager, Tran Nguyen, Lydia Kopplin, Anna T. Andrusaite, Susan A. V. Jennings, Britta Simons, +8 more
7citations -
Transcriptome, metabolome and suppressor analysis reveal an essential role for the ubiquitin-proteasome system in seedling chloroplast development2022 BMC Plant Biology article Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Prabhavathi Talloji, Lilian Nehlin, Bruno Hüttel, Nikola Winter, Martin Černý, Hana Dufková, +9 more
3citations -
Normal hearing function genetics: have you heard all about it? An integrated approach of genome-wide association studies and transcriptome-wide association studies in three Italian cohorts
Aurora Santin, Giulia Pianigiani, Alessandro Gialluisi, Alessandro Pecori, Beatrice Spedicati, Mariarosaria Persichillo, +13 more
2citations -
Peripheral blood transcriptome profiling enables monitoring disease progression in dystrophic mice and patients2021 EMBO Molecular Medicine article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Mirko Signorelli, Mitra Ebrahimpoor, Olga Veth, Kristina Maria Hettne, Nisha E. Verwey, Raquel García‐Rodríguez, +9 more
23citations -
Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study2020 Bioinformatics and Biology Insights article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Deepak Mav, Dhiral P. Phadke, Michele R. Balik-Meisner, Bruce Alex Merrick, Scott S. Auerbach, Marije Niemeijer, +7 more
10citations -
Antithrombin, Protein C, and Protein S: Genome and Transcriptome-Wide Association Studies Identify 7 Novel Loci Regulating Plasma Levels2023 Arteriosclerosis Thrombosis and Vascular Biology article Medicine Blood Coagulation and Thrombosis Mechanisms Open access
Yuekai Ji, Gerard Temprano‐Sagrera, Lori A. Holle, Allison Bebo, Jennifer A. Brody, Ngoc‐Quynh Le, +34 more
7citations -
Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents
Lukas Mathur, Bence Szalai, N. H. Du, Ramesh Utharala, Martine Ballinger, Jonathan J. M. Landry, +4 more
27citations