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Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling2022 iScience article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Barbara Scalvini, Helmut Schießel, Anatoly Golovnev, Alireza Mashaghi
9citations -
ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Integrated topology and shape optimization of a thin-walled automotive demonstrator under casting constraints2026 Journal of Manufacturing Processes article Engineering Topology Optimization in Engineering Open access
Nima Roudbarian, Mohammadali Ebadi, Jayesh Singh, Lukas Kettenhofen, Mahan Firoozbakht, Andreas Bührig–Polaczek, +1 more
0citations -
Cosmic topology. Part IIb. Eigenmodes, correlation matrices, and detectability of non-orientable Euclidean manifolds2026 Journal of Cosmology and Astroparticle Physics article Physics and Astronomy Cosmology and Gravitation Theories Open access
Craig J. Copi, Amirhossein Samandar, Glenn D. Starkman, Javier Carrón Duque, Y. Akrami, S Anselmi, +10 more
1citations -
Normalized Field Product Approach: A Parameter‐Free Density Evaluation Method for Close‐To‐Binary Solutions in Topology Optimization With Embedded Length Scale3citations
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Constraining stochastic 3-D structural geological models with topology information using approximate Bayesian computation in GemPy 2.12021 Geoscientific model development article Earth and Planetary Sciences Geological Modeling and Analysis Open access
Alexander Schaaf, Miguel de la Varga, Florian Wellmann, Clare Elizabeth Bond
26citations -
Four‐dimensional elastically deformed simplex space‐time meshes for domains with time‐variant topology2021 International Journal for Numerical Methods in Fluids article Engineering Advanced Numerical Methods in Computational Mathematics Open access
Max von Danwitz, Patrick Antony, Fabian Key, Norbert Hosters, Marek Behr
15citations -
Circuit Topology Approach for the Comparative Analysis of Intrinsically Disordered Proteins2023 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Barbara Scalvini, Vahid Sheikhhassani, Nadine van de Brug, Laurens W.H.J. Heling, Jeremy D. Schmit, Alireza Mashaghi
10citations -
Enhanced Hemodynamics of Anisometric TPMS Topology Reduce Blood Clotting in 3D Printed Blood Contactors2024 Advanced Healthcare Materials article Engineering 3D Printing in Biomedical Research Open access
Lukas T. Hirschwald, Franziska Hagemann, Maik Biermann, Paul Hanßen, Patrick Hoffmann, Tim Höhs, +16 more
4citations -
Cosmic topology. Part IIIb. Eigenmodes and correlation matrices of spin-2 perturbations in orientable Euclidean manifolds2025 Journal of Cosmology and Astroparticle Physics article Physics and Astronomy Cosmology and Gravitation Theories Open access
Amirhossein Samandar, Javier Carrón Duque, Craig J. Copi, Mikel Martin Barandiaran, Deyan P. Mihaylov, Glenn D. Starkman, +10 more
2citations