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Phiclust: a clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations2022 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva de Sousa Lopes, Diego Garlaschelli, Stefan Semrau
19citations -
Physical interactions between specifically regulated subpopulations of the MCM and RNR complexes prevent genetic instability2024 PLoS Genetics article Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access
Aurora Yáñez‐Vilches, Antonia María Romero, Marta Barrientos‐Moreno, Esther Cruz, Román González‐Prieto, Sushma Sharma, +2 more
3citations -
A clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva de Sousa Lopes, Diego Garlaschelli, Stefan Semrau
0citations -
High‐Resolution Multiparameter DNA Flow Cytometry for Accurate Ploidy Assessment and the Detection and Sorting of Tumor and Stromal Subpopulations from Paraffin‐Embedded Tissues1citations
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Fluorescence-activated cell sorting of Escherichia coli L-forms reveals maintained synchronized nucleic acid synthesis dynamics2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Marjolein E. Crooijmans, Johannes H. DE WINDE, Dennis Claessen
0citations -
Pharmacodynamic modeling of colistin and imipenem against in vitro Pseudomonas aeruginosa biofilms2026 Biofilm article Biochemistry, Genetics and Molecular Biology Bacterial biofilms and quorum sensing Open access
Yuchen Guo, Jinqiu Yin, Linda B. S. Aulin, Oana Ciofu, Claus Ernst Moser, Parth J. Upadhyay, +4 more
1citations -
GraphHDBSCAN*: Graph-based Hierarchical Clustering on High Dimensional Single-cell RNA Sequencing Data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Seyed Ardalan Ghoreishi, Aleksandra Szmigiel, James Shiniti Nagai, Ivan G. Costa, Arthur Zimek, Ricardo J. G. B. Campello
0citations -
Clinical and Metabolic Signatures of FAM47E–SHROOM3 Haplotypes in a General Population Sample2025 Kidney International Reports article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Dariush Ghasemi-Semeskandeh, Eva König, Luisa Foco, Nikola Đorđević, Martin Gögele, Johannes Rainer, +6 more
6citations -
Author Correction: Osteopontin Expression in Small Airway Epithelium in Copd is Dependent on Differentiation and Confined to Subsets of Cells2020 Scientific Reports erratum Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access
Mohamad N. Ali, Michiko Mori, Tinne C. J. Mertens, Premkumar Siddhuraj, Jonas S. Erjefält, Patrik Önnerfjord, +2 more
3citations -
Pharmacodynamic modeling of colistin and imipenem against in vitro Pseudomonas aeruginosa biofilms.2026 PubMed article Biochemistry, Genetics and Molecular Biology Bacterial biofilms and quorum sensing Open access
Yuchen Guo, 殷金秋, Linda B. S. Aulin, Oana Ciofu, Claus Moser, Parth J. Upadhyay, +4 more
0citations