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Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jieran Sun, Kirti Biharie, Peiying Cai, Niklas Müller‐Bötticher, Paul Kießling, Meghan A. Turner, +48 more
4citations -
On the benchmarking of clustering algorithms and hyperparameter influence for cell type detection in single-cell RNA sequencing data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Aleksandra Szmigiel, Ivan G. Costa, Ricardo J. G. B. Campello
1citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations -
GraphHDBSCAN*: Graph-based Hierarchical Clustering on High Dimensional Single-cell RNA Sequencing Data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Seyed Ardalan Ghoreishi, Aleksandra Szmigiel, James Shiniti Nagai, Ivan G. Costa, Arthur Zimek, Ricardo J. G. B. Campello
0citations -
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Tiago Maié, Michael T. Schaub, Ivan G. Costa
3citations -
qCLUE: a quantum clustering algorithm for multi-dimensional datasets2024 Frontiers in Quantum Science and Technology article Computer Science Quantum Computing Algorithms and Architecture Open access
Dhruv Gopalakrishnan, Luca Dellantonio, Antonio Di Pilato, W. Redjeb, Felice Pantaleo, Michele Mosca
3citations -
High-Resolution Spatial Profiling Unveils Cellular Heterogeneity in Murine Atherosclerosis2025 Thrombosis and Haemostasis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Jan M. Wrobel, S. Jung, Paul Kießling, Emilia Scheidereit, Christoph Kuppe, Venetia Bazioti, +2 more
2citations -
Clustering has a meaning: optimization of angular similarity to detect 3D geometric anomalies in geological terrains2022 Solid Earth article Earth and Planetary Sciences Geological Modeling and Analysis Open access cited by 1 patent
Michał Michalak, Lesław Teper, Florian Wellmann, Jerzy Żaba, Krzysztof Gaidzik, Marcin Kostur, +2 more
3citations -
Euclid: Early Release Observations – Overview of the Perseus cluster and analysis of its luminosity and stellar mass functions★2025 Astronomy and Astrophysics article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Jean‐Charles Cuillandre, M. Bolzonella, A. Boselli, Francine R. Marleau, Mondelin M., Jenny G. Sorce, +86 more
22citations -
scE(match): Privacy-Preserving Cluster Matching of Single-Cell Data2024 IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom) conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Johannes Lohmöller, Jannis Scheiber, Rafael Kramann, Klaus Wehrle, Sikander Hayat, Jan Pennekamp
3citations