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SpaGE: Spatial Gene Enhancement using scRNA-seq2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
7citations -
GraphComm: A Graph-based Deep Learning Method to Predict Cell-Cell Communication in single-cell RNAseq data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Emily So, Sikander Hayat, Sisira Kadambat Nair, Bo Wang, Benjamin Haibe‐Kains
13citations -
Advancing multi-day ex vivo kidney perfusion using spatially resolved metabolomics2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Organ Transplantation Techniques and Outcomes Open access
Marlon J.A. de Haan, Franca M. R. Witjas, Annemarie M. A. de Graaf, Marleen E Jacobs, Elena Sánchez‐López, Sarantos Kostidis, +13 more
0citations -
Chromatin remodelling subunit SMARCB1 is implicated in dendrite development and complex brain functions2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetics and Neurodevelopmental Disorders Open access
Alina Filatova, Joanna Chiang, Myrthe R. M. Kamphof, Bodo Laube, Gijs W.E. Santen, Hanna Swaab, +1 more
0citations -
Experiments on localization accuracy with non-individual and individual HRTFs comparing static and dynamic reproduction methods2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Speech and Audio Processing Open access
Josefa Oberem, Jan-Gerrit Richter, Dorothea Setzer, Julia C. Seibold, Iring Koch, Janina Fels
27citations -
Comparative transcriptomics reveals human-specific cortical features2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nikolas L. Jorstad, Janet H. T. Song, David Exposito-Alonso, Hamsini Suresh, Fenna M. Krienen, Anna Marie Yanny, +35 more
24citations -
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Struebing, Claus Reimertz, Yaligara Veeranagouda, +6 more
4citations -
SciViewer- An interactive browser for visualizing single cell datasets2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Dhawal S. Jain, Sikander Hayat, Joydeep Charkaborty, Pooja Srinivasa, Michael H. Cho, Edwin K. Silverman, +2 more
1citations -
A clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva de Sousa Lopes, Diego Garlaschelli, Stefan Semrau
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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Flexible 3D kirigami probes for in vitro and in vivo neural applications2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neural Engineering Open access
Marie Jung, Jamal Abu Shihada, Simon Decke, Lina Koschinski, Peter Severin Graff, Anke Höllig, +4 more
2citations -
Evaluation of Key Spatiotemporal Learners for Print Track Anomaly Classification Using Melt Pool Image Streams2023 arXiv (Cornell University) preprint Engineering Additive Manufacturing Materials and Processes Open access
Lynn Cherif, Mutahar Safdar, Guy Lamouche, Priti Wanjara, Padma Polash Paul, Gentry Wood, +3 more
0citations -
A pervasive large conjugative plasmid mediates multispecies biofilm formation in the intestinal microbiota increasing resilience to perturbations2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Leonor García-Bayona, Nathania Said, Michael J. Coyne, Katia Flores, Nazik M. Elmekki, Madeline L. Sheahan, +6 more
6citations -
Two-compartment neuronal spiking model expressing brain-state specific apical-amplification, -isolation and -drive regimes2023 arXiv (Cornell University) preprint Neuroscience Neural dynamics and brain function Open access
Elena Pastorelli, Alper Yegenoglu, Nicole Kolodziej, Willem A. M. Wybo, Francesco Simula, Sandra Diaz-Pier, +2 more
4citations