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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation2022 Journal of Structural Biology article Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
J. Jiménez de la Morena, Pablo Conesa, Yunior C. Fonseca, F.P. de Isidro-Gómez, David Herreros, Estrella Fernández-Giménez, +24 more
50citations -
Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards7citations
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Enabling Research through the SCIP Optimization Suite 8.02023 ACM Transactions on Mathematical Software article Mathematics Advanced Optimization Algorithms Research Open access
Ksenia Bestuzheva, Mathieu Besançon, Wei‐Kun Chen, Antonia Chmiela, Tim Donkiewicz, Jasper van Doornmalen, +28 more
66citations -
Synthesizer: Synthetic Observables for Modern Astronomy2026 The Journal of Open Source Software article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
William J Roper, Christopher C. Lovell, Aswin P. Vijayan, Stephen M. Wilkins, Hollis B. Akins, Sabrina Berger, +12 more
4citations -
Machine-readable specification and intelligent cloud-based execution of logical test cases for automated driving functions2024 Automated Software Engineering article Computer Science Software Testing and Debugging Techniques Open access
Max‐Arno Meyer, Mehdi Zouari, Sebastian Bannenberg, Markus Deppe, Sébastien Christiaens, Sung-Yong Lee, +1 more
2citations -
MiMiC: Multiscale Modeling in Computational Chemistry2020 Frontiers in Molecular Biosciences article Physics and Astronomy Advanced Chemical Physics Studies Open access
Viacheslav Bolnykh, Jógvan Magnus Haugaard Olsen, Simone Meloni, Martin P. Bircher, Emiliano Ippoliti, Paolo Carloni, +1 more
10citations -
ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data2023 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access
Alexander Vieth, Thomas Kroes, Julian Thijssen, Baldur van Lew, Jeroen Eggermont, Soumyadeep Basu, +4 more
9citations -
13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Wolfgang Wiechert, Katharina Nöh
5citations -
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks2024 The Journal of Open Source Software article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jochen Nießer, Michael Osthege, Eric von Lieres, Wolfgang Wiechert, Stephan Noack
1citations -
AiZynthFinder 4.0: developments based on learnings from 3 years of industrial application2024 Journal of Cheminformatics article Computer Science Computational Drug Discovery Methods Open access
Lakshidaa Saigiridharan, Alan Kai Hassen, Helen Lai, Paula Torren-Peraire, Ola Engkvist, Samuel Genheden
55citations -
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows2023 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +13 more
4citations