Papers matching “single-nucleus RNA sequencing” 47
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Single-nucleus RNA sequencing: immature excitatory neurons and transformed glia build human BRAFV600E-negative gangliogliomas2025 Brain Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Silvia Cases‐Cunillera, Philipp Müller, Ashley J. Waardenberg, Susanne Schoch, Gilles Huberfeld, Anke Höllig, +4 more
2citations -
Single-Cell Multiomics Analysis of Human Kidney Diseases2025 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Turgay Saritas, Charlotte Boys, Christoph Kuppe, Sidrah Maryam, Tore Bleckwehl, Debashish Mohanta, +11 more
0citations -
Cell-type-specific damage scores reveal kidney and liver disease trajectories in single-cell and spatial transcriptomics2026 Cell Genomics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tsimafei Padvitski, Paula Unger Avila, He Chen, Cem Özel, Fabian Braun, Marie-Kristin Kroll, +16 more
1citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
Single-cell and spatial transcriptomics resolve airway obliteration in bronchiolitis obliterans syndrome2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Transplantation: Methods and Outcomes Open access
Jannik Ruwisch, Hande Yilmaz, Leonard Christian, Lavinia Neubert, Lena Maureen Leiber, Annalea Brüggemann, +29 more
0citations -
Defining cardiac functional recovery in end-stage heart failure at single-cell resolution2023 Nature Cardiovascular Research article Engineering Mechanical Circulatory Support Devices Open access
Junedh Amrute, Lulu Lai, Pan Ma, Andrew L. Koenig, Kenji Kamimoto, Andrea L. Bredemeyer, +14 more
79citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Edinburgh Research Explorer (University of Edinburgh) dataset Medicine Systemic Sclerosis and Related Diseases Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
2citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Systemic Sclerosis and Related Diseases Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
0citations -
Matrix Metalloproteinase-7 in Urinary Extracellular Vesicles Identifies Rapid Disease Progression in Autosomal Dominant Polycystic Kidney Disease2023 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Martijn H. van Heugten, Charles J. Blijdorp, Sita Arjune, Hester van Willigenburg, Karel Bezstarosti, Jeroen Demmers, +9 more
18citations -
Towards building the human lung perturbation atlas from slice cultures across health and disease2026 conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Lena Cords, Lea Zimmermann, Diana Porras-Gonzalez, Ahmed Agami, Sai Rama Sridatta Prakki, Danny David Jonigk, +12 more
0citations -
Aberrant and ectopic cell populations in restrictive allograft syndrome after lung transplantation2026 European Respiratory Journal article Medicine Transplantation: Methods and Outcomes Open access
Lena Maureen Leiber, Leonard Christian, Lavinia Neubert, Jannik Ruwisch, Hande Yilmaz, Edith Katharina Plucinski, +25 more
2citations -
The pleuroparenchymal fibroelastosis atlas reveals aberrant cell states and their zonation as an alternate roadmap to lung fibrosis2026 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access
Jannik Ruwisch, Aurélie Cazes, Lena Maureen Leiber, Raphaël Borie, Lavinia Neubert, C Leonard, +39 more
4citations -
Platelet-Instructed SPP1 Macrophages Drive Myofibroblast Activation in Fibrosis in a CXCL4-Dependent Manner2022 Journal of the American Society of Nephrology conference-abstract Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access
Konrad Hoeft, Gideon J L Schaefer, David Schumacher, Hyoijn Kim, Barbara M. Klinkhammer, Christoph Kuppe, +3 more
0citations -
Vascular niches are the primary hotspots for aging within the multicellular architecture of cardiac tissue2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cardiac Fibrosis and Remodeling Open access
David Rodríguez Morales, Veronica Larcher, Mariano Ruz Jurado, Lukas Stefan Tombor, Lukas Zanders, Julian U. G. Wagner, +5 more
0citations -
Forkhead box versus NF-κB hippocampal snRNA-seq profiles distinguish anti-Drebrin- and anti-GAD65-positive encephalitis2026 Journal of Neuroinflammation article Medicine Autoimmune Neurological Disorders and Treatments Open access
Karen M. J. van Loo, Daniel S. Galvis-Montes, Annika Breuer, Juliane L Berns, Chiara A. Hummel, Tobias R. Baumgartner, +12 more
0citations