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Single-Cell Integration and Multi-Modal Profiling Reveals Phenotypes and Spatial Organization of Neutrophils in Colorectal Cancer2025 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Valentin Marteau, Niloofar Nemati, Kristina Handler, Deeksha Raju, Alexander Kirchmair, Dietmar Rieder, +37 more
0citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access
Emin Onur Karakaslar, Jeppe F. Severens, Elena Sánchez‐López, Peter A. van Veelen, Mihaela Zlei, Jacques J. M. van Dongen, +7 more
1citations -
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Phil Fang Cheng, Olivier Alain Michielin, +3 more
10citations -
The proteomic landscape of proteotoxic stress in a fibrogenic liver disease2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Florian A. Rosenberger, Sophia Clara Mädler, Katrine Holtz Thorhauge, Sophia Steigerwald, Malin Fromme, Caroline A M Weiss, +13 more
2citations -
Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Chengyu Zhang, Feiran Li, Cheng Wei Quan Eiden, William Taussig Scott, Ulf W. Liebal, Lars M. Blank, +8 more
8citations -
Spatial multi-omics reveals targetable immunosuppressive macrophage T-cell interactions in human AML bone marrow2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access
Merel van der Meulen, Emma S. Pool, Alicia Perzolli, Joost B. Koedijk, Eva M. Argiro, Li‐Ting Chen, +18 more
0citations -
Deciphering the Signaling Network Landscape of Breast Cancer Improves Drug Sensitivity Prediction2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology PI3K/AKT/mTOR signaling in cancer Open access
Marco Tognetti, Attila Gábor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Konstantina Charmpi, +5 more
5citations -
Tumour-derived factors prime microglia for immune checkpoint-mediated T-cell regulation2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
Luca D Schreurs, Jessica Barz, Trong-Hieu Nguyen, Jule Schmedding, Liudmila Lobastova, Patrick Hoelker, +9 more
0citations -
Ageing of the Upper Airway Epithelial Niche Limits Tissue-Resident T Cell Immunity2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Wesley Huisman, Lisa A. King, Youvika Singh, Alicia C. de Kroon, Rosanne A. M. Steenbergen, Iris van der Valk, +19 more
0citations -
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Anna Bujko, Liesbet Martens, +30 more
97citations -
Latent plasticity of the human pancreas across development, health, and disease2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Elisabetta Mereu, Diego Balboa, Johannes Liebig, A. Herrero, Anna Martinez Casals, Mariya Mardamshina, +37 more
5citations
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