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Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Single-cell analysis of regions of interest (SCARI) using a photosensitive tag2021 Nature Chemical Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Anne M. van der Leun, Mirjam E. Hoekstra, Luuk Reinalda, Colinda L. G. J. Scheele, Mireille Toebes, Michel J. van de Graaff, +11 more
18citations -
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ping‐Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien‐Yu Chen, +3 more
0citations -
From Mythology to Methodology: Untargeted Single-Cell Metabolomics in R with MeDUSA2026 Journal of the American Society for Mass Spectrometry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies
Laura Ann Castaneda, Eric Hetzel, Fercan Gül, Thomas Hankemeier
0citations -
Comparison of Liquid Chromatography- and Nano-Electrospray Ionization-Mass Spectrometry Approaches for Single-Cell Metabolomics2026 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Abigail Cook, Claire Davison, Jordan Pascoe, Harpreet Atwal, George Mayson, Dany J. V. Beste, +1 more
2citations -
Single-cell RNA sequencing of human fetal epicardium reveals novel markers and regulators of EMT2020 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
T J Streef, Tessa van Herwaarden, Anke M. Smits, Marie‐José Goumans
0citations -
High-dimensional single-cell analysis of human natural killer cell heterogeneity2024 Nature Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Lucas Rebuffet, Janine E. Melsen, Bertrand Escalière, Daniela Basurto-Lozada, Avinash Bhandoola, Niklas K. Björkström, +21 more
278citations -
Single-cell analysis of human fetal epicardium reveals its cellular composition and identifies CRIP1 as a modulator of EMT2023 Stem Cell Reports article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Thomas J. Streef, Esmee J. Groeneveld, Tessa van Herwaarden, Jesper Hjortnaes, Marie‐José Goumans, Anke M. Smits
16citations -
Single-cell characterization of human periodontal ligament (PDL) cells reveals uniformly mesenchymal populations in matched maxilla and mandible pairs from four donors2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Periodontal Regeneration and Treatments Open access
Chloé Radermacher, Robert Dzhanaev, Christian Hasberg, Sabine Neuß-Stein, Andrea Gorgels, Julia Moellmann, +8 more
0citations -
Single-Cell Transcriptomics Reveals Discrete Steps in Regulatory T Cell Development in the Human Thymus2021 The Journal of Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access
Florencia Morgana, Rianne Opstelten, Manon C. Slot, Andrew Mark Scott, René A. W. van Lier, Bianca Blom, +2 more
24citations -
Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry2022 Journal for ImmunoTherapy of Cancer article Medicine Pancreatic and Hepatic Oncology Research Open access
Thomas P. Brouwer, Natasja L. De Vries, Tamim Abdelaal, Ricki T. Krog, Zheng Li, Dina Ruano, +7 more
26citations -
Single-Cell Transcriptomics Analysis of Human Small Antral Follicles2021 International Journal of Molecular Sciences article Medicine Reproductive Biology and Fertility Open access
Xueying Fan, Ioannis Moustakas, Monika Bialecka, Julieta S. del Valle, Arend W. Overeem, Leoni A. Louwé, +4 more
35citations -
Single Cell Analysis of Regions of Interest (SCARI) using a Novel Photoswitchable Tag2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Anne M. van der Leun, Mirjam E. Hoekstra, Luuk Reinalda, Colinda L. G. J. Scheele, Mireille Toebes, Michel J. van de Graaff, +10 more
0citations -
Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing2022 Journal of Visualized Experiments article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Yang Ge, Lieke van Roon, H. Sophia Chen, Ruben Methorst, Marco C. DeRuiter, Szymon M. Kiełbasa, +1 more
3citations -
Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing2022 Journal of Visualized Experiments article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Yang Ge, Lieke van Roon, H. Sophia Chen, Ruben Methorst, Marco C. DeRuiter, Szymon M. Kiełbasa, +1 more
2citations -
Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria2022 Environmental Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Afrizal Afrizal, Thomas C. A. Hitch, Alina Viehof, Nicole Simone Treichel, Birte Abt, Eva Miriam Buhl, +3 more
61citations