Papers matching “sequencing depth” in Genomics and Phylogenetic Studies 16
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Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
16citations -
Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Long-read sequencing reveals that the mitochondrial genome of an individual Ixodiphagus hookeri is a mixture of structural variants with an invariable core region and heterogeneous repeat regions2026 Current Research in Parasitology and Vector-Borne Diseases article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ron P. Dirks, Hans J. Jansen, Wouter J. Veneman, Jane Segobola, Valérie O. Baede, Veronika Blažeková, +3 more
0citations -
Reference Genomes used in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Metagenome-Assembled Genomes Generated in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Metagenome-Assembled Genomes Generated in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Peng Jia, Lianhua Dong, Xiaofei Yang, Bo Wang, Tingjie Wang, Jiadong Lin, +15 more
6citations -
Additional file 1 of Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet2023 Figshare dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Peng Jia, Lianhua Dong, Xiaofei Yang, Bo Wang, Stephen J. Bush, Tingjie Wang, +17 more
0citations -
SASpector: analysis of missing genomic regions in draft genomes of prokaryotes2022 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Cédric Lood, Alejandro Correa Rojo, Deniz Sinar, Emma Verkinderen, Rob Lavigne, Vera van Noort
1citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
0citations -
Multicenter benchmarking of short and long read wet lab protocols for clinical viral metagenomics2024 Journal of Clinical Virology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
F. Xavier López‐Labrador, Michael Huber, Igor A. Sidorov, Julianne Rose Brown, Lize Cuypers, Lies Laenen, +26 more
22citations -
Multicenter benchmarking of short and long read wet lab protocols for clinical viral metagenomics2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
F. Xavier López‐Labrador, Michael Huber, Igor A. Sidorov, Julianne Rose Brown, Lize Cuypers, Lies Laenen, +25 more
1citations -
Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Felix Stiehler, Marvin Steinborn, Daniela Dey, Andreas P.M. Weber, Alisandra K. Denton
179citations -
Accessible viral metagenomics for public health and clinical domains with Jovian2024 Scientific Reports article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Dennis Schmitz, Florian Zwagemaker, Sam Nooij, Thierry Janssens, Jeroen Cremer, Robert Verhagen, +5 more
4citations
16 results