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Compute-Efficient Medical Image Classification with Softmax-Free Transformers and Sequence Normalization2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Firas Khader, Omar S. M. El Nahhas, Tianyu Han, Gustav Anton Müller‐Franzes, Sven Nebelung, Jakob Nikolas Kather, +1 more
0citations -
Genome sequence and characterization of Streptomyces phage Pablito, representing a new species within the genus Janusvirus2022 Research Square preprint Environmental Science Bacteriophages and microbial interactions Open access
Véronique Ongenae, Joana Azeredo, Andrew M. Kropinski, Daniel E. Rozen, Ariane Briegel, Dennis Claessen
2citations -
Adversarial Robustness of Time-Series Classification for Crystal Collimator Alignment2026 arXiv (Cornell University) preprint Computer Science Adversarial Robustness in Machine Learning Open access
Xaver Fink, Borja Fernández Adiego, Daniele Mirarchi, Eloise Matheson, Álvaro García González, Gianmarco Ricci, +1 more
0citations -
Ten numbers from the Laplace–Beltrami spectrum facilitate training-free classification of protein structures based on surface shape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Miriam Fernández-Giro Muñoz, Jessica Emonts, Benjamin Berkels, Johannes F. Buyel
0citations -
Analysis of more than 400,000 women provides case-control evidence for BRCA1 and BRCA2 variant classification2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology BRCA gene mutations in cancer Open access
Maria Zanti, Denise G O'Mahony, Michael T. Parsons, Leila Dorling, Joe Dennis, Nicholas James Boddicker, +91 more
3citations -
Evaluation of Key Spatiotemporal Learners for Print Track Anomaly Classification Using Melt Pool Image Streams2023 arXiv (Cornell University) preprint Engineering Additive Manufacturing Materials and Processes Open access
Lynn Cherif, Mutahar Safdar, Guy Lamouche, Priti Wanjara, Padma Polash Paul, Gentry Wood, +3 more
0citations -
Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jutte J.C. de Vries, Julianne Rose Brown, Nicole Fischer, Igor A. Sidorov, Sofia Morfopoulou, Jiabin Huang, +24 more
2citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Evaluation of in silico predictors on short nucleotide variants in HBA1, HBA2 and HBB associated with haemoglobinopathies2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Stella Tamana, Maria Xenophontos, Anna Minaidou, Coralea Stephanou, Cornelis L. Harteveld, Celeste Bento, +10 more
0citations -
Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ellen C. Carbo, Igor A. Sidorov, Anneloes L. van Rijn-Klink, Sander van Boheemen, Hailiang Mei, Pieter Sicco Hiemstra, +4 more
4citations -
TEtrimmer: a novel tool to automate the manual curation of transposable elements2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Jiangzhao Qian, Hang Xue, Shujun Ou, Jessica M. Storer, Lisa Fürtauer, Mary C. Wildermuth, +2 more
7citations -
The fully resolved genome of Bacillus thuringiensis HER1410 reveals a cry -containing chromosome, two megaplasmids & an integrative plasmidial prophage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Entomopathogenic Microorganisms in Pest Control Open access
Ana Lechuga, Cédric Lood, Margarita Salas, V. Vera van Noort, Rob Lavigne, Modesto Redrejo‐Rodríguez
0citations -
LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non-Coding RNA2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Luuk Romeijn, Davy Cats, Katherine Wolstencroft, Hailiang Mei
4citations -
Extinct species identification from Upper Pleistocene bone fragments not identifiable from their osteomorphological studies by proteomics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Archaeology and ancient environmental studies Open access
Fabrice Bray, Stéphanie Flament, Grégory Abrams, Dominique Bonjean, Kévin Di Modica, Christian H. Rolando, +2 more
4citations -
Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Moein Heidari, Sina Ghorbani Kolahi, Sanaz Karimijafarbigloo, Bobby Azad, Afshin Bozorgpour, Soheila Hatami, +5 more
4citations -
SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Ping Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations -
The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas Putida Group2021 Preprints.org preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Léa Girard, Cédric Lood, Monica Höfte, Peter A. R. Vandamme, Hassan Rokni‐Zadeh, Vera van Noort, +2 more
30citations