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SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteome2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications
Yassene Mohammed, Vincent R. Richard, M. Immanuel Reyes Madlangsakay, Ying Lao, Victor Spicer, Claudia Gaither, +4 more
0citations -
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Hannah Voß, Shweta Godbole, Simon Schlumbohm, Yannis Schumann, Martin Mynarek, Stefan Rutkowski, +14 more
1citations -
Proteome modulation by opposite inotropic drugs in human engineered cardiac tissue revealed by topology-driven cross-modal integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Doroteya K. Staykova, Danique Snippert, Hans J. C. T. Wessels, R. C. Passier, Federica Conte
0citations -
Beyond the classical plasma secretome: genetic architecture and disease associations of the expanded human plasma proteome in 13,445 Europeans2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Solène Cadiou, Eva König, Alessia Mapelli, Giulia Pontali, Dariush Ghasemi-Semeskandeh, Michele Filosi, +34 more
0citations -
The Effect of Metformin Treatment on the Circulating Proteome2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Metabolism, Diabetes, and Cancer Open access
Ben J. Connolly, LAURA J. MCCREIGHT, Roderick C. Slieker, Khaled Bedair, Louise A. Donnelly, Juliette A. de Klerk, +9 more
0citations -
End of preservation normothermic machine perfusion of porcine kidneys after ischaemic injury reprograms metabolism and induces fibrosis after transplant despite unchanged function: insights from the renal proteome2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Organ Transplantation Techniques and Outcomes Open access
John F. Mulvey, Corinna Snashall, Kaithlyn M. Rozenberg, Maria Letizia Lo Faro, Marco Eijken, Stine Lohmann, +10 more
0citations -
Proteome-wide ubiquitinome profiling reveals substrate-specific dynamics within the USP7 network2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Joyce Wolf van der Meer, Jan A. VAN DER KNAAP, Ayestha Sijm, Karel Bezstarosti, Dick H. W. Dekkers, Wouter A. S. Doff, +2 more
0citations -
Using BONCAT To Dissect The Proteome Of S. aureus Persisters2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Eva D. C. George Matlalcuatzi, Thomas Bakkum, Stephan M. Hacker, Bogdan I. Florea, Bastienne Vriesendorp, Daniel E. Rozen, +1 more
0citations -
Allicin inhibits SARS-CoV-2 replication and abrogates the antiviral host response in the Calu-3 proteome2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Garlic and Onion Studies Open access
Kirstin Mösbauer, Verena Nadin Fritsch, Lorenz Adrian, Jörg Bernhardt, Martin C. H. Gruhlke, Alan John Slusarenko, +2 more
12citations -
APOE genotypes differentially remodel the astrocytic lipid droplet-associated proteome to shape lipid droplet dynamics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Lipid metabolism and biosynthesis Open access
Carla Cuní‐López, Jessica T. Root, Ying Hao, Isabelle Kowal, Niek Blomberg, Rodolfo Ghirlando, +7 more
7citations -
SUMO Activated Target Traps (SATTs) enable the identification of a comprehensive E3-specific SUMO proteome2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Daniel Salas‐Lloret, Coen van der Meulen, Easa Nagamalleswari, Ekaterina Gracheva, Arnoud H. de Ru, H. Anne Marie Otte, +5 more
3citations -
Proteome-wide quantitative RNA interactome capture (qRIC) identifies phosphorylation sites with regulatory potential in RBM202021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Carlos H. Vieira-Vieira, Vita Dauksaite, Michael Gotthardt, Matthias Selbach
0citations -
Multiomics Analyses Reveal Dynamic Bioenergetic Pathways and Functional Remodeling of the Heart During Intermittent Fasting2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Dietary Effects on Health Open access
Thiruma Valavan Arumugam, Asfa Alli Shaik, Elisa Anamaria Liehn, Sharmelee Selvaraji, Luting Poh, Vismitha Rajeev, +19 more
2citations -
Comprehensive chromatin proteomics resolves functional phases of pluripotency2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Enes Ugur, Alexandra de la Porte, Sebastian Bultmann, Micha Drukker, Matthias Mann, Michael Wierer, +1 more
0citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
Inhibition of transcription leads to rewiring of locus-specific chromatin proteomes2020 Genome Research preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Deepani W. Poramba‐Liyanage, Tessy Korthout, Christine E. Cucinotta, Ila van Kruijsbergen, Tibor van Welsem, Dris El Atmioui, +3 more
14citations -
Machine learning for optimal growth temperature prediction of prokaryotes using amino acid descriptors2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Sophie Colette, Jérémie François, Bart De Moor, Vera van Noort
4citations -
Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
2citations -
Grasping the constraints of pure bacterial strains for the complete catabolism of micropollutants: a proteomic and kinetic study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Ana P. Lopez Gordillo, Alba Trueba-Santiso, Kilian E. C. Smith, Juan Manuel Lema
0citations