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ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Fi-score: a novel approach to characterise protein topology and aid in drug discovery studies2020 Journal of Biomolecular Structure and Dynamics article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics
Austė Kanapeckaitė, Claudia Beaurivage, MATTHEW J. HANCOCK, Erik Verschueren
3citations -
Topological Investigation of Protein Folding and Intrinsic Disorder2026 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Muriel Elizabeth Hammond, Vasily Akulov, John van Noort, Laura B. Zwep, Alireza Mashaghi
1citations -
Circuit Topology Approach for the Comparative Analysis of Intrinsically Disordered Proteins2023 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Barbara Scalvini, Vahid Sheikhhassani, Nadine van de Brug, Laurens W.H.J. Heling, Jeremy D. Schmit, Alireza Mashaghi
10citations -
Cytosolic Interactome Protects Against Protein Unfolding in a Single Molecule Experiment2023 Advanced Biology article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Barbara Scalvini, Laurens W.H.J. Heling, Vahid Sheikhhassani, Vanda Šunderlíková, Sander J. Tans, Alireza Mashaghi
3citations -
Phosphorylation-Regulated Conformational Diversity and Topological Dynamics of an Intrinsically Disordered Nuclear Receptor2025 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Vasily Akulov, Alba Jiménez‐Panizo, Eva Estébanez‐Perpiñá, John van Noort, Alireza Mashaghi
7citations -
Topological dynamics of an intrinsically disordered N‐terminal domain of the human androgen receptor2022 Protein Science article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Vahid Sheikhhassani, Barbara Scalvini, Laurens W.H.J. Heling, Yosri Ayache, Tom M. J. Evers, Eva Estébanez‐Perpiñá, +2 more
29citations -
A structural machine learning approach for rapid prediction of thermodynamically destabilizing tyrosine phosphorylations2025 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Jaie C. Woodard, Atena Malemir Chegini, Jian Tian, Rupa Bhowmick, Subramaniam Pennathur, Alireza Mashaghi, +2 more
3citations -
Conserved structural features of RNA export pores spanning the double membrane of arterivirus and coronavirus replication organelles2026 Journal of Virology article Agricultural and Biological Sciences Animal Virus Infections Studies Open access
Nina L. de Beijer, Ronald W.A.L. Limpens, Montserrat Bárcena, Eric J. Snijder
0citations