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Utilizing protein structure graph embeddings to predict the pathogenicity of missense variants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Miriam Elbracht, Ingo Kurth, Jeremias Krause
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Genolator: A Multimodal Large Language Model Fusing Natural Language, Genomic, and Structural Tokens for Protein Function Interpretation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Martin Danner, Tanhim Islam, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, +1 more
0citations -
Highly Repeatable Tissue Proteomics for Kidney Transplant Pathology: Technical and Biological Validation of Protein Analysis using LC-MS/MS2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Rianne Hofstraat, Kristina Marx, Renata Blatnik, Nike Claessen, Hessel Peters Sengers, Sandrine Florquin, +2 more
3citations -
Unraveling the Phase Behavior, Mechanical Stability, and Protein Reconstitution Properties of Polymer-Lipid Hybrid Vesicles2023 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Lipid Membrane Structure and Behavior Open access
Wagner Augusto Müller, Paul A. Beales, André Rodrigues Muniz, Lars J. C. Jeuken
0citations -
Unraveling the Phase Behavior, Mechanical Stability, and Protein Reconstitution Properties of Polymer-Lipid Hybrid Vesicles2023 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Lipid Membrane Structure and Behavior Open access
Wagner Augusto Müller, Paul A. Beales, André Rodrigues Muniz, Lars J. C. Jeuken
0citations -
New methods on the block: Taxonomic identification of archaeological bones in resin-embedded sediments through palaeoproteomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Archaeology and ancient environmental studies Open access
Zandra Fagernäs, Gaudry Troché, Paul S. Goldberg, Jean‐Jacques Hublin, Shannon Patrick McPherron, William Chase Murphree, +9 more
1citations -
The proteomic landscape of proteotoxic stress in a fibrogenic liver disease2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Florian A. Rosenberger, Sophia Clara Mädler, Katrine Holtz Thorhauge, Sophia Steigerwald, Malin Fromme, Caroline A M Weiss, +13 more
2citations -
Lrif1 modulates Trim28-mediated repression of the Dux locus in mouse embryonic stem cells2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Darina Šikrová, Román González‐Prieto, Alfred C.O. Vertegaal, Judit Balog, Lucia Daxinger, Silvère M. van der Maarel
0citations -
A novel widespread bacterial structure related to the flagellar type III secretion system2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Mohammed Kaplan, Catherine M. Oikonomou, Cecily R. Wood, Georges Chreifi, Debnath Ghosal, Megan J. Dobro, +7 more
0citations -
MultiGML: Multimodal Graph Machine Learning for Prediction of Adverse Drug Events2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Sophia Krix, Lauren Nicole DeLong, Sumit Madan, Daniel Domingo‐Fernándéz, Ashar Ahmad, Sheraz Gul, +2 more
3citations -
Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Hannah Voß, Shweta Godbole, Simon Schlumbohm, Yannis Schumann, Martin Mynarek, Stefan Rutkowski, +14 more
1citations -
Vimentin intermediate filaments organize organellar architecture in response to ER stress2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Skin and Cellular Biology Research Open access
Tom Cremer, Lenard M. Voortman, Erik Bos, Daphne M. van Elsland, Laurens R. ter Haar, Roman I. Koning, +2 more
5citations -
TGFB-Induced Factor Homeobox 1 (TGIF) Expression in Breast Cancer2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Christine Stürken, Volker J. Möbus, Karin Milde‐Langosch, Sabine Schmatloch, Peter Andreas Fasching, Josef Rüschoff, +13 more
1citations -
New motifs in Ndc1 mediating interaction with the Nup84 complex and nuclear membranes2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Nuclear Structure and Function Open access
Ingo Amm, Marion H Weberruss, Andrea Hellwig, Johannes Schwarz, Marianna Tatarek‐Nossol, Christian Lüchtenborg, +4 more
1citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
From Atoms to Neuronal Spikes: A Multi-Scale Simulation Framework2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access
Vincenzo Carnevale, Thorsten Hater, Nauman Sultan, Giulia Rossetti, Sandra Diaz-Pier, Paolo Carloni
0citations