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Performance and Robustness of Parameter Estimation from Phylogenetic Trees Using Neural Networks2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Tianjian Qin, Koen J. van Benthem, Luís Valente, Rampal S. Etienne
6citations -
Strain-specific higher-order interactions break phylogenetic conservatism in microbial communities2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Microbial Community Ecology and Physiology Open access
Emmanuel Cordero-Martínez, Marisol Navarro-Miranda, Obed Ramírez‐Sánchez, Edder D. Bustos‐Díaz, Victor M. Higareda‐Alvear, Gabriel Moreno‐Hagelsieb, +3 more
0citations -
Hundreds of nuclear and plastid loci yield insights into orchid relationships2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Diversity and Evolution Open access
Oscar Alejandro Pérez-Escobar, Steven Dodsworth, Diego Bogarín, Sidonie Bellot, Juan Antonio Balbuena, Rowan Schley, +16 more
2citations -
The genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi has been driven by two major evolutionary lineages2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Yeasts and Rust Fungi Studies Open access
Vinícius Delgado da Rocha, Everton Geraldo Capote Ferreira, Fernanda Machado Castanho, Marcia Kamogae Kuwahara, Claudia Vieira Godoy, M. C. Meyer, +10 more
2citations -
Phylogenomics Resolves the Ancient and Rapid Radiation of Banded Newts (Genus Ommatotriton)2024 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Konstantinos Kalaentzis, Stephanie Koster, Jan W. Arntzen, Sergé Bogaerts, James France, Christos Kazilas, +4 more
6citations -
Rampant transitions between dispersal syndromes during angiosperm evolution2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Diversity and Evolution Open access
Dieder de Frens, Freek T. Bakker, Hervé Sauquet, Ruby E. Stephens, Renske E. Onstein
3citations -
The robustness of a simple dynamic model of island biodiversity to geological and eustatic change2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Evolution and Paleontology Studies Open access
Pedro Santos Neves, Joshua W. Lambert, Luís Valente, Rampal S. Etienne
3citations -
Placing very long branch taxa in the plant tree of life: a case study with Dioscoreales mycoheterotrophs2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Diversity and Evolution Open access
Marybel Soto Gomez, Qianshi Lin, Nathaniel J. Klimpert, Vivienne K. Y. Lam, Juan Viruel, Vincent S. F. T. Merckx, +2 more
1citations -
Organellar data sets confirm overall angiosperm relationships if problematic RNA-edit sites are accounted for in mitochondrial genomes2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Diversity and Evolution Open access
Wesley K. Gerelle, Matthias Jost, Isabel Marques, D. H. Les, Rodrigo Vallejos, Stefan A. Little, +11 more
0citations -
DAISIEprep: an R package for the extraction and formatting of data for the island biogeography model DAISIE2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Ecology and Vegetation Dynamics Studies Open access
Joshua W. Lambert, Lizzie Roeble, Théo Pannetier, Rampal S. Etienne, Luís Valente
0citations -
The effect of mainland dynamics on data and parameter estimates in island biogeography2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Evolution and Paleontology Studies Open access
Joshua W. Lambert, Pedro Santos Neves, Richèl J.C. Bilderbeek, Luís Valente, Rampal S. Etienne
6citations -
Genetic diversity of the pathogenic banana Fusarium wilt in northern Viet Nam2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Banana Cultivation and Research Open access
Loan Le Thi, Arne Mertens, Dang Toan Vu, Dang Tuong Vu, Pham Le Anh Minh, Huy Nguyen Duc, +9 more
1citations -
Ancient and recent riverine gene flow contributed to the adaptive radiation of sailfin silversides in Wallace's Dreampond2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Els L. R. De Keyzer, Fabian Herder, Astrid Böhne, Francisco Campuzano Jiménez, Valentina Burskaia, Sandra Kukowka, +3 more
1citations -
Population genomic analysis reveals cryptic population structure in the commercially important Lake Malawi cichlid Copadichromis mloto2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Wilson Sawasawa, Alexander Hooft van Huysduynen, Sophie Gresham, Harold Sungani, Bosco Rusuwa, Gudrun De Boeck, +3 more
1citations
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