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Comparative phosphoproteome analysis of primary and metastatic uveal melanoma cell lines2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Ocular Oncology and Treatments Open access
Kseniya Glinkina, Román González‐Prieto, Amina F.A.S. Teunisse, Maria Chiara Gelmi, Martine Johanna Jager, Alfred C.O. Vertegaal, +1 more
0citations -
Multiomics Analyses Reveal Dynamic Bioenergetic Pathways and Functional Remodeling of the Heart During Intermittent Fasting2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Dietary Effects on Health Open access
Thiruma Valavan Arumugam, Asfa Alli Shaik, Elisa Anamaria Liehn, Sharmelee Selvaraji, Luting Poh, Vismitha Rajeev, +19 more
2citations -
Clostridioides difficile phosphoproteomics shows an expansion of phosphorylated proteins in stationary growth phase2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access
Wiep Klaas Smits, Yassene Mohammed, Arnoud de Ru, Valentina Cordo’, Annemieke H. Friggen, Peter A. van Veelen, +1 more
0citations -
Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Aurélien J. F. Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Kristina Bennet Emdal, Dorte B. Bekker‐Jensen, +7 more
16citations -
Rapid prediction of thermodynamically destabilizing tyrosine phosphorylations in cancers2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Jaie C. Woodard, Atena Malemir Chegini, Jian Tian, Rupa Bhowmick, Subramanium Pennathur, Alireza Mashaghi, +2 more
2citations -
Proteome-wide quantitative RNA interactome capture (qRIC) identifies phosphorylation sites with regulatory potential in RBM202021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Carlos H. Vieira-Vieira, Vita Dauksaite, Michael Gotthardt, Matthias Selbach
0citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
CellEKT: A robust chemical proteomics workflow to profile cellular target engagement of kinase inhibitors2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Joel Rüegger, Berend Gagestein, Antonius P. A. Janssen, Alexandra Valeanu, Alger Lazo Mori, Marielle van der Peet, +16 more
1citations -
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Chronic Kidney Disease and Diabetes Open access
Nadine Tuechler, Mira Lea Burtscher, Martín Garrido‐Rodríguez, Muzamil Majid Khan, Dénes Türei, Christian Tischer, +8 more
0citations -
Multi-omics reveals global signaling rewiring and identifies Activin A-induced dysregulation of FOS/Activator Protein 1 as a novel target in Fibrodysplasia ossificans progressiva2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Heterotopic Ossification and Related Conditions Open access
Marius Wits, Nerea Gomez-Suarez, Alexandre Deber, Nicole Farfán, Fjodor T. Bekedam, Bharath K. Sampadi, +8 more
0citations -
MSstatsBioNet: Integrating Statistical Analyses with Prior Knowledge Biomolecular Networks for Quantitative Proteomics and Phosphoproteomics2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Anthony Wu, Devon Kohler, Pruthvi Prakash Navada, Julia E. Robbins, Gabriel E. Boyle, Alex Boshart, +7 more
0citations -
Phosphorylation of serines 287/288 in DEK regulates cell-type-specific chromatin occupancy and compaction2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Gongjie Wu, M. F. Meister, Sandra Reissner, Pia J Mueller, Ferdinand Kappes
0citations
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