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A Multi-Omics Approach Reveals Enrichment in Metabolites Involved in the Regulation of the Glutathione Pathway in LIN28B-Dependent Cancer Cells2024 International Journal of Molecular Sciences article Medicine Neuroblastoma Research and Treatments Open access
Matteo Stocchero, Diana Corallo, Silvia Bresolin, Marcella Pantile, Paola Pirillo, Roberta Bortolozzi, +7 more
2citations -
Hyperpathway: visualizing organization of pathway-molecule enriched interactions in omics studies via hyperbolic bipartite network embedding2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ilyes Abdelhamid, Ziheng Liao, Yuchi Liu, Armel Lefebvre, Aldo Acevedo, Carlo Vittorio Cannistraci
0citations -
Hyperpathway: visualizing organization of pathway-molecule enriched interactions in omics studies via hyperbolic bipartite network embedding2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ilyes Abdelhamid, Ziheng Liao, Yuchi Liu, Armel Lefebvre, Carlo Vittorio Cannistraci
0citations -
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan G. Gleixner, Manu P. Kumar, Elisabetta Mereu, +6 more
367citations -
Discovering heart failure patient pathways through event enrichment and abstraction2026 International Journal of Medical Informatics article Business, Management and Accounting Business Process Modeling and Analysis Open access
Anton Antonov, Harry H. Beyel, Marlo Verket, Christopher T. Schwanen, Viki Peeva, Marco Pegoraro, +5 more
0citations -
Effects of enrichment strategies on outcome of adrecizumab treatment in septic shock: Post-hoc analyses of the phase II adrenomedullin and outcome in septic shock 2 trial2022 Frontiers in Medicine article Medicine Sepsis Diagnosis and Treatment Open access cited by 4 patents
Dirk P. T. van Lier, Adrien Picod, Gernot Marx, Pierre‐François Laterre, Oliver Hartmann, Claudia Knothe, +6 more
22citations -
German longevity study reveals novel rare pro-longevity alleles clustering in mTOR signaling pathway2025 GeroScience article Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Daniel Kolbe, Janina Dose, Pasquale C. Putter, Malte Ziemann, Matthias Laudes, P. Eline Slagboom, +3 more
4citations -
The Omega‐6 Lipid pathway shift is associated with neutrophil influx and structural lung damage in early cystic fibrosis lung disease2024 Clinical & Translational Immunology article Medicine Cystic Fibrosis Research Advances Open access
Lisa J. M. Slimmen, Jelle Y. Broos, B. Manaï, Silvia Estevão, Martin A. Giera, Gijs Kooij, +2 more
4citations -
A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ozan Özışık, Nazli Sila Kara, Tooba Abbassi‐Daloii, Morgane Térézol, Elsa C. Kuijper, Núria Queralt-Rosiñach, +7 more
1citations -
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea2022 Plant Methods article Biochemistry, Genetics and Molecular Biology Genetic Mapping and Diversity in Plants and Animals Open access
Rutger Aldo Vos, Catharina A. M. van der Veen‐van Wijk, M. Eric Schranz, Klaas Vrieling, Peter G. L. Klinkhamer, Frederic Lens
2citations -
Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study2020 Bioinformatics and Biology Insights article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Deepak Mav, Dhiral P. Phadke, Michele R. Balik-Meisner, Bruce Alex Merrick, Scott S. Auerbach, Marije Niemeijer, +7 more
10citations -
Large-scale exome array summary statistics resources for glycemic traits to aid effector gene prioritization2023 Wellcome Open Research article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Sara M. Willems, Natasha Hui Jin Ng, Juan Fernandez, Rebecca S. Fine, Eleanor Wheeler, Jennifer Wessel, +94 more
7citations -
GRIDGENE: Guided Region Identification based on Density of GENEs—a transcript density-based approach to characterize tissues by spatial transcriptomics2026 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, M Rocha, Jessica P Roelands, Noel F.C.C. de Miranda
2citations -
Network-based approach identified distinct pathways between lesioned and preserved articular cartilage transcriptome2020 Osteoarthritis and Cartilage article Medicine Osteoarthritis Treatment and Mechanisms Open access
Rodrigo Coutinho de Almeida, Olga Veth, Ahmed Essam Mahfouz, Hailiang Mei, Rob G. H. H. Nelissen, Y.F. Ramos, +2 more
0citations -
PathwayFinder enables linked exploration of cell types and gene modules in spatially resolved transcriptomics data2026 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Lisa Koorneef, Thomas Höllt, Louise van der Weerd, +1 more
0citations -
REBELS-IFU: dust build-up in massive galaxies at redshift 72025 Monthly Notices of the Royal Astronomical Society article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Hiddo Algera, Lucie E. Rowland, Mauro Stefanon, Marco Palla, Laura Sommovigo, Hanae Inami, +17 more
19citations -
Neural and behavioral signatures of social evaluation and adaptation in childhood and adolescence: The Leiden consortium on individual development (L-CID)2020 Developmental Cognitive Neuroscience article Neuroscience Neural and Behavioral Psychology Studies Open access
Eveline A. Crone, Michelle Achterberg, Simone Dobbelaar, Saskia Euser, Bianca G. van den Bulk, Mara van der Meulen, +4 more
76citations -
A synthesis and subgroup analysis of the eosinophilic esophagitis tissue transcriptome2023 Journal of Allergy and Clinical Immunology article Medicine Eosinophilic Esophagitis Open access
Justin Jacobse, Rachel E. Brown, Frank L. Revetta, Michael Fredrick Vaezi, Matthew A. Buendia, Christopher S. Williams, +5 more
23citations