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NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Xiao-Ping Liu, Rachel A. Dalley, Nelson Johansen, Agata Budzillo, Julian Thijssen, Jeremy A. Miller, +84 more
0citations -
A Layered Microcircuit Model of Somatosensory Cortex with Three Interneuron Types and Cell-Type-Specific Short-Term Plasticity2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Han-Jia Jiang, Guanxiao Qi, Renato Duarte, Dirk Feldmeyer, Sacha Jennifer van Albada
8citations -
An integrated single-cell RNA-seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptional and functional types2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jari B. Berkhout, Delaram Poormoghadam, Chun‐Xia Yi, Andries Kalsbeek, Onno Cornelis Meijer, Ahmed Essam Mahfouz
0citations -
Morphoelectric properties of inhibitory neurons shift gradually and regardless of cell type along the depth of the cerebral cortex2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neuropharmacology Research Open access
Felipe Yáñez, Fernando Messore, Guanxiao Qi, Nima Dehghani, Hanno Meyer, Dirk Feldmeyer, +2 more
0citations -
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Simon Musall, Xiaonan Richard Sun, Hemanth Mohan, Xu An, Steven Gluf, Shu-Jing Li, +6 more
26citations -
Transcriptional and cell type profiles of cortical brain regions showing ultradian cortisol rhythm dependent responses to emotional face stimulation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Stress Responses and Cortisol Open access
Philippe C. Habets, Konstantinos Kalafatakis, Oleh Dzyubachyk, Steven J.A. van der Werff, Arlin Keo, Jamini Thakrar, +5 more
0citations -
Predicting cell-type-specific exon inclusion in the human brain reveals more complex splicing mechanisms in neurons than glia2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Lieke Michielsen, Justine Hsu, Anoushka Joglekar, Natan Belchikov, Marcel J. T. Reinders, Hagen Tilgner, +1 more
4citations -
Modeling neuron-astrocyte interactions in neural networks using distributed simulation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Han-Jia Jiang, Jugoslava Aćimović, Tiina Manninen, Iiro Ahokainen, Jonas Stapmanns, Mikko Lehtimäki, +4 more
4citations -
Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Edinson Lucumi Moreno, Cornelius C.W. Willacey, Jennifer Modamio, Fátima Liliana Monteiro, +18 more
12citations -
The Alzheimer’s disease risk gene ABCA7 regulates microglial lysosomal and lipid homeostasis and promotes phagocytosis to maintain neuronal health2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
Sarah Elise Heuer, Fasih M. Ahsan, Gizem Terzioğlu, Arnab Misra, Duc Duong, Chaitanya Katkar, +4 more
0citations -
Linking Altered Neuronal and Synaptic Properties to Nicotinic Receptor Alpha5 Subunit Gene Dysfunction: A Translational Investigation in Rat mPFC and Human Cortical Layer 62024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Nicotinic Acetylcholine Receptors Study Open access
Danqing Yang, Guanxiao Qi, Daniel Delev, Uwe Maskos, Dirk Feldmeyer
1citations -
Lipid Disbalance Affects Neuronal Dendrite Growth and Maintenance in a Human Ceramide Synthase Disease Model2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Sphingolipid Metabolism and Signaling
Anna B. Ziegler, Cedrik Wesselmann, Konstantin Beckschaefer, Anna‐Lena Wulf, Neena Dhiman, Peter Soba, +3 more
2citations -
Polyclonal sensory neuron derivation from iPSCs as an efficient alternative to single clone strategies for pain-relevant in vitro models2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Anika Neureiter, Luise Ruessmann, Petra A. I. Hautvast, Maike Franziska Dohrn, Noortje W.M. van den Braak, Arzu Stoppe, +4 more
0citations -
Capture of Post-Pluripotency Human Neuromesodermal and Neural Tube Axial Stem Cell States2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Dolunay Kelle, Enes Ugur, Ejona Rusha, Dmitry Shaposhnikov, Alessandra Livigni, Sandra Horschitz, +16 more
4citations -
Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, +94 more
89citations -
FOXP1 differentially regulates the development of murine vasopressin and oxytocin magnocellular neurons2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Psychology Neuroendocrine regulation and behavior Open access
Jari B. Berkhout, Sophie Trender, Quirin Krabichler, Yuval Podpecan, J. Peter H. Burbach, Valery Grinevich, +5 more
0citations