Papers matching “microbial growth modeling” 67
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Growth-coupled microbial biosynthesis of the animal pigment xanthommatin2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Leah B. Bushin, Tobias B. Alter, Maria V G Alván-Vargas, Lara Dürr, Elina C. Olson, Mariah J. Avila, +5 more
0citations -
Development of an integrative dynamic model associating morpho-rheological patterns of bioprocesses with filamentous microorganisms2024 HAL (Le Centre pour la Communication Scientifique Directe) conference-paper Engineering Fluid Dynamics and Mixing
Leonie Schumann, Anna Dinius, Zuzanna Justyna Kozanecka, Jochen Büchs, Luc Fillaudeau, Rainer Krull
0citations -
Bayesian calibration, process modeling and uncertainty quantification in biotechnology2022 PLoS Computational Biology article Decision Sciences Optimal Experimental Design Methods Open access cited by 1 patent
Laura M. Helleckes, Michael Osthege, Wolfgang Wiechert, Eric von Lieres, Marco Oldiges
34citations -
Bayesian calibration, process modeling and uncertainty quantification in biotechnology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Gaussian Processes and Bayesian Inference Open access
Laura M. Helleckes, Michael Osthege, Wolfgang Wiechert, Eric von Lieres, Marco Oldiges
4citations -
A multiscale spatiotemporal model including a switch from aerobic to anaerobic metabolism reproduces succession in the early infant gut microbiota2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
David M. Versluis, Ruud Schoemaker, Ellen Looijesteijn, Daniël Muysken, Prescilla V. Jeurink, Marcel Paques, +2 more
2citations -
Critical evaluation of the microbial turnover to biomass approach for the estimation of biogenic non-extractable residues (NER)2022 Environmental Sciences Europe article Environmental Science Environmental Chemistry and Analysis Open access
Stefan Trapp, Andreas Libonati Brock, Matthias Kästner, Andreas Schäffer, Dieter Hennecke
14citations -
Foliar herbivory on plants creates soil legacy effects that impact future insect herbivore growth via changes in plant community biomass allocation2022 Functional Ecology article Agricultural and Biological Sciences Insect-Plant Interactions and Control Open access
Robin Heinen, Madhav Prakash Thakur, Jetske R. Hiddes De Fries, Katja Steinauer, Simon Vandenbrande, Renske Jongen, +1 more
12citations -
2’-Fucosyllactose inhibits proliferation of Clostridioides difficile ATCC 43599 in the CDi-screen, an in vitro model simulating Clostridioides difficile infection2022 Frontiers in Cellular and Infection Microbiology article Medicine Clostridium difficile and Clostridium perfringens research Open access
Maria Wiese, Frank H. J. Schuren, Wiep Klaas Smits, Ed J. Kuijper, Anita Ouwens, Margreet Heerikhuisen, +5 more
16citations -
The microbiome protects against septic hyperinflammation and bacterial proliferation in a zebrafish model of blood infection with Escherichia coli and mycobacteria2026 Frontiers in Immunology article Immunology and Microbiology Immune Response and Inflammation Open access
Li Liu, Bjørn E. V. Koch, Elke H. J. Krekels, Herman P. Spaink
1citations -
Islands in a sea of stone: Distinct microbial soil communities in Tilia tree pits compared to paved soils2026 Urban forestry & urban greening article Environmental Science Microbial Community Ecology and Physiology Open access
Sjoerd Gremmen, Panji Cahya Mawarda, Tisja Meijers, Jorinde Nuytinck, Michael Stech
0citations -
Studying microbial triglyceride production from corn stover saccharides unveils insights into the galactose metabolism of Ustilago maydis2024 Microbial Cell Factories article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 1 patent
Paul Richter, Jathurshan Panchalingam, Katharina Miebach, Kerstin Schipper, Michael Feldbrügge, Marcel Mann
8citations -
Distinct colorectal cancer genotypes shape microbial ecosystems and reveal stage-specific microbiota dependencies2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Valentina Brunner, Nicholas Bodenstein, Antonio Enrico Zaurito, M Silva, Frederic Saab, Fabian Springer, +18 more
0citations -
2′-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations2024 iScience article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
David M. Versluis, Ruud Schoemaker, Ellen Looijesteijn, Jan M.W. Geurts, Roeland M. H. Merks
7citations -
Cell type-specific modulation of metabolic, immune-regulatory, and anti-microbial pathways by CD1012024 Mucosal Immunology article Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access
Marius Wrage, Tim Holland, Björn Nüse, Johanna Kaltwasser, Jessica Fröhlich, Harald Arnold, +12 more
10citations -
Genomic and metabolic plasticity drive alternative scenarios for adapting Pseudomonas putida to non-native substrate D-xylose2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Pavel Dvořák, Barbora Burýšková, Barbora Popelářová, Birgitta E. Ebert, Tibor Botka, Dalimil Bujdoš, +6 more
0citations -
Adaptive laboratory evolution in a novel parallel shaken pH‐auxostat2024 Biotechnology and Bioengineering article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Burak Sarikaya, Hendrik Bück, Gino Pohen, FILIPE REIS RODRIGUES, Karsten Günster, Katrin Wefelmeier, +3 more
3citations -
Communities of Niche-optimized Strains (CoNoS) – Design and creation of stable, genome-reduced co-cultures2022 Metabolic Engineering article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Simone Schito, Rico Zuchowski, Daniel Bergen, Daniel Strohmeier, Bastian Wollenhaupt, Philipp Menke, +7 more
19citations