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Isotope Labeling Reveals Complex Microbial Interactions during Agaricus bisporus Compost Colonization2026 Zenodo (CERN European Organization for Nuclear Research) software Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
Madalina M. Vita, Femke van Dam, Michiel V. M. Kienhuis, Desmond D. Eefting, Klaas G.J. Nierop, S. Emilia Hannula, +3 more
0citations -
Investigating colonization patterns of the infant gut microbiome during the introduction of solid food and weaning from breastmilk: A cohort study protocol2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sara E. Dizzell, Jennifer C. Stearns, Jenifer Li, Niels van Best, Liene Bervoets, Monique Mommers, +3 more
20citations -
Nutritional factors influencing microbiota-mediated colonization resistance of the oral cavity: A literature review2022 Frontiers in Nutrition article Dentistry Oral microbiology and periodontitis research Open access
Nuraly Sh. Akimbekov, Ilya Digel, Adil Y. Yerezhepov, Raiymbek S. Shardarbek, Xia Wu, Jian Zha
28citations -
Host-microbial interactions at the nasal mucosa in young children and adults: A retrospective, cross-sectional study2026 Cell Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Jesús Reiné, Lisa A. King, Youvika Singh, Wouter A. A. de Steenhuijsen Piters, Beatriz F. Carniel, Carla Solórzano, +27 more
1citations -
Additional file 5 of Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data2023 Figshare dataset Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Gaia Sambruni, Angeli D.G. Macandog, Jakob Wirbel, Danilo Cagnina, Carlotta Catozzi, Tiziano Dallavilla, +9 more
0citations -
ICP1 bacteriophage treatment antagonizes colonization of the zebrafish larval intestine by Vibrio cholerae2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Adam Sidi Mabrouk, Jamie S. Depelteau, Chiara Foini, Susanne Brenzinger, Ronald W.A.L. Limpens, Manuel Majrouh, +2 more
2citations -
ICP1 bacteriophage treatment antagonizes colonization of the zebrafish larval intestine by Vibrio cholerae2026 Microbiology Spectrum article Environmental Science Bacteriophages and microbial interactions Open access
Adam Sidi Mabrouk, Jamie S. Depelteau, Chiara Foini, Annabel Kempff, Sebastiaan Jonker, Susanne Brenzinger, +4 more
0citations -
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies2023 Nature article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access cited by 1 patent
Katherine M. Kennedy, Marcus C. de Goffau, María Elisa Pérez-Muñoz, Marie‐Claire Arrieta, Fredrik Bäckhed, Peer Bork, +39 more
390citations -
Microbial transmission in the social microbiome and host health and disease2024 Cell article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Amar Sarkar, Cameron J.A. McInroy, Siobhán Harty, Aura Raulo, Neil G.O. Ibata, Mireia Valles‐Colomer, +10 more
131citations -
Distinct Intestinal Microbial Signatures Linked to Accelerated Biological Aging in People with HIV2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Shalini Thakur Singh, Leila B. Giron, Maliha W. Shaikh, Shivanjali Shankaran, Phillip A. Engen, Aaron R. Goldman, +13 more
5citations -
Distinct intestinal microbial signatures linked to accelerated systemic and intestinal biological aging2024 Microbiome article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Shalini Thakur Singh, Leila B. Giron, Maliha W. Shaikh, Shivanjali Shankaran, Phillip A. Engen, Zlata R. Bogin, +17 more
59citations -
Asymptomatic gut colonization by extended-spectrum beta-lactamase-producing Escherichia coli is not associated with an altered gut microbiome or metabolome in Dutch adults2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Quinten R. Ducarmon, Romy Daniëlle Zwittink, Roel P J Willems, Aswin Verhoeven, Sam Nooij, Fiona R.M. van der Klis, +6 more
1citations -
Abiotic soil matrix, rather than microbial community composition, determines litter C cycling2024 conference-abstract Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access
Kyle Mason‐Jones, Kira Ingenhoven, S. Emilia Hannula, G. F. Veen, Wim H. van der Putten
0citations -
Antifungal biosynthesis by root-associated Streptomyces and Pseudomonas is elicited upon plant colonization2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Wendalina Tigani, Chao Du, Somayah S. Elsayed, Emtinan Diab, Paolo Innocenti, Iulian Rimboi, +4 more
1citations -
Persistence of plant-mediated microbial soil legacy effects in soil and inside roots2021 Nature Communications article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
S. Emilia Hannula, Robin Heinen, Martine Huberty, Katja Steinauer, Jonathan Richard De Long, Renske Jongen, +1 more
263citations -
Persistence of plant-mediated microbial soil legacy effects in soil and inside roots2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
S. Emilia Hannula, Robin Heinen, Martine Huberty, Katja Steinauer, Jonathan Richard De Long, Renske Jongen, +1 more
14citations -
Microbial and clay-mediated dolomite formation in a saline playa lake: Implications for biosignatures on Mars2026 Geoscience Frontiers article Physics and Astronomy Planetary Science and Exploration Open access
Mónica Sánchez‐Román, Zeina Naim, Antonio Sánchez-Navas, Annemiek C. Waajen, Karthick Babu Sai Sankar Gupta, Fernando Nieto
2citations -
Bacterial bile duct colonization in perihilar cholangiocarcinoma and its clinical significance2021 Scientific Reports article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access
Jan Bednarsch, Zoltán Czigány, Lara Rosaline Heij, Tom Luedde, Ronald M. van Dam, Sven Arke Lang, +3 more
38citations