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LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non-Coding RNA2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Luuk Romeijn, Davy Cats, Katherine Wolstencroft, Hailiang Mei
4citations -
Roles for the long non-coding RNA Pax6os1 / PAX6-AS1 in pancreatic beta cell identity and function2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Livia López–Noriega, Rebecca Callingham, Aida Martínez-Sánchez, Sameena Nawaz, Grazia Pizza, Nejc Haberman, +13 more
6citations -
The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Shanna Dewaele, Louis Delhaye, Boél De Paepe, Eric James de Bony, Jilke De Wilde, Katrien Vanderheyden, +13 more
0citations -
Down-Regulation of Human Long Non-Coding RNA LINC01187 Is Associated with Nephropathies2021 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Theodora Manolakou, Valeria Kaltezioti, Niki Prakoura, Panagiotis Kavvadas, Simone Reichelt‐Wurm, Hara Gakiopoulou, +10 more
0citations -
Cell Type-Specific and Diabetic Kidney Disease-Associated Expression of Long Non-Coding RNAs in Human Kidneys2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ‘t Hart, +14 more
0citations -
Elucidating another level of epigenetic regulation in osteoarthritis by identifying functional cis -acting long non-coding RNAs and their targets in articular cartilage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Osteoarthritis Treatment and Mechanisms Open access
Marcella van Hoolwerff, Paula I. Metselaar, Margo Tuerlings, H. Eka D. Suchiman, Nico Lakenberg, Y.F. Ramos, +6 more
0citations -
Long Non-Coding RNAs in Response to Ebola Virus Vaccine-Induced Immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Izabela Mamede, Thomaz Lüscher Dias, Isabelle Franco Moscardini, Barbara Marinho, Fernando Marcon, Thiago Dominguez Crespo Hirata, +11 more
0citations -
Circular RNA MMP9 interacts with HNRNPC and HRNPA1 and potentially influences the expression of BIRC5 by sequestering miR-149 and supporting glioblastoma progress2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Circular RNAs in diseases Open access
Javad Amini, Nikta Zafarjafarzadeh, Sara Ghahramanlu, Omid Mohammadalizadeh, Bahram Bibak, Nima Sanadgol
1citations -
Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Jiangzhao Qian, Heba M. M. Ibrahim, Myriam Erz, Florian Kümmel, Ralph Panstruga, Stefan Kusch
2citations -
HIF1α-AS1 is a DNA:DNA:RNA triplex-forming lncRNA interacting with the HUSH complex2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Matthias S. Leisegang, Jasleen Kaur Bains, Sandra Seredinski, James A. Oo, Nina M. Krause, Chao‐Chung Kuo, +21 more
0citations -
Site-specific analysis reveals candidate cross-kingdom small RNAs, tRNA and rRNA fragments, and signs of fungal RNA phasing in the barley-powdery mildew interaction2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Stefan Kusch, Mansi Singh, Hannah Thieron, Pietro D. Spanu, Ralph Panstruga
6citations -
MEG8 regulates Tissue Factor Pathway Inhibitor 2 (TFPI2) expression in the endothelium2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Veerle Kremer, Diewertje I. Bink, Laura Stanicek, Eva van Ingen, Sarah Hilderink, Anne Yaël Nossent, +1 more
0citations -
A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Huaming Xu, Zhijian Li, Chao‐Chung Kuo, Katrin Götz, Thomas A. Look, Marcelo A. S. Toledo, +3 more
2citations -
DNA Methylation Signatures of Alcohol Use Disorder – A large-scale Meta-Analysis in the Psychiatric Genomics Consortium2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Lea Zillich, Sofia D'Augello, Diana Avetyan, Graciela Delgado, Ian R. Gizer, Jeesun Jung, +37 more
1citations -
The genome of the "Sea Vomit" Didemnum vexillum2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ernesto Parra-Rincón, Cristian A. Velandia-Huerto, Jörg Fallmann, Adriaan Gittenberger, Federico D. Brown, Peter Florian Stadler, +1 more
1citations -
EphrinA5 regulates cell motility by modulating the targeting of DNMT1 to the Ncam1 promoter via lncRNA/DNA triplex formation2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Can Bora Yildiz, Tathagata Kundu, Julia Gehrmann, Jannis Koesling, Amin Ravaei, Mira Jakovcevski, +5 more
0citations -
EphrinA5 regulates cell motility by modulating lncRNA/DNA triplex-dependent targeting of DNMT1 to the Ncam1 promoter2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Can Bora Yildiz, Tathagata Kundu, Julia Gehrmann, Jannis Koesling, Amin Ravaei, Mira Jakovcevski, +5 more
0citations -
Refining the transcriptional landscapes for distinct clades of virulent phages infecting pseudomonas aeruginosa2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Leena Putzeys, Laura Wicke, Maarten Boon, Vera van Noort, Jörg Vogel, Rob Lavigne
1citations -
Integrating Liquid-Liquid Phase Separation and Tumor Microenvironment Regulation: A lncRNA-Based Prognostic Model for Pancreatic Cancer2025 Research Square preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Yaqing Wei, Xiguang Sun, Yifei Wang, Lu Zhao, Chenhui Zhang, Hao Yao, +1 more
0citations -
Systematic annotation of orphan RNAs reveals blood-accessible molecular barcodes of cancer identity and cancer-emergent oncogenic drivers2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Jeffrey Wang, Jung Min Suh, Brian J Woo, Albertas Navickas, Kristle Garcia, Keyi Yin, +10 more
7citations