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An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Stavros Makrodimitris, Bram Pronk, Tamim Abdelaal, Marcel J. T. Reinders
3citations -
Phylotranscriptomics Reveals the Reticulate Evolutionary History of a Widespread Diatom Species Complex2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Ozan Çiftçi, Andrew James Alverson, Peter M. van Bodegom, Wade R. Roberts, Adrienne Mertens, Bart Van de Vijver, +5 more
0citations -
Mapping complex optical light field distributions with single fluorescent molecules2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Ivan A. Gligonov, Oleksii Nevskyi, David Malsbenden, Dominik Wöll, Jörg Enderlein
0citations -
Predicting clinical drug response from model systems by non-linear subspace-based transfer learning2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Soufiane M. C. Mourragui, Marco Loog, Daniël J. Vis, Kat S Moore, Anna G. Manjón, Mark A. van de Wiel, +2 more
9citations -
Faraday tomography of LoTSS-DR2 data: III. Revealing the Local Bubble and the complex of local interstellar clouds in the high-latitude inner Galaxy2024 arXiv (Cornell University) preprint Physics and Astronomy Astrophysics and Star Formation Studies Open access
A. Erceg, Vibor Jelić, M. Haverkorn, L. Gajović, M. J. Hardcastle, T. W. Shimwell, +1 more
0citations -
Compute-Efficient Medical Image Classification with Softmax-Free Transformers and Sequence Normalization2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Firas Khader, Omar S. M. El Nahhas, Tianyu Han, Gustav Anton Müller‐Franzes, Sven Nebelung, Jakob Nikolas Kather, +1 more
0citations -
Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Moein Heidari, Sina Ghorbani Kolahi, Sanaz Karimijafarbigloo, Bobby Azad, Afshin Bozorgpour, Soheila Hatami, +5 more
4citations