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Immune-related Gene Expression Predicts Response to Neoadjuvant Chemotherapy but not Additional Benefit from PD-L1 Inhibition in Women with Early Triple-negative Breast Cancer2021 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies
Bruno Valentin Sinn, Sibylle Loibl, Claus Alexander Hanusch, Dirk-Michael Zahm, Hans‐Peter Sinn, Michael Untch, +16 more
46citations -
The Human Pathogen Mycobacterium tuberculosis and the Fish Pathogen Mycobacterium marinum Trigger a Core Set of Late Innate Immune Response Genes in Zebrafish Larvae
Ron P. Dirks, Anita Ordas, Susanne A. Jong-Raadsen, Sebastiaan A. Brittijn, Mariëlle C. Haks, Christiaan V. Henkel, +8 more
4citations -
Comparative gene expression pattern of immune-related genes using dual-color RT-MLPA in the lesions of cutaneous leishmaniasis caused by L. major and L. tropica2025 PLoS neglected tropical diseases article Medicine Research on Leishmaniasis Studies Open access
Nasrin Masoudzadeh, Mouad Ait Kbaich, Suzanne van Veen, Mariëlle C. Haks, Josefine Persson, Vahid Mashayekhi Goyonlo, +9 more
3citations -
The human pathogen Mycobacterium tuberculosis and the fish pathogen Mycobacterium marinum trigger the same core set of late innate immune response genes in zebrafish larvae2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Ron P. Dirks, Anita Ordas, Susanne A. Jong-Raadsen, Sebastiaan A. Brittijn, Mariëlle C. Haks, Christiaan V. Henkel, +8 more
2citations -
Correcting differential gene expression analysis for cyto-architectural alterations in substantia nigra of Parkinson’s disease patients reveals known and potential novel disease-associated genes and pathways2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Parkinson's Disease Mechanisms and Treatments Open access
Federico Ferraro, Fevga Christina, Bonifati Vincenzo, Mandemakers Wim, Mahfouz Ahmed, Reinders Marcel
0citations -
Correcting Differential Gene Expression Analysis for Cyto—Architectural Alterations in Substantia Nigra of Parkinson’s Disease Patients Reveals Known and Potential Novel Disease—Associated Genes and Pathways
Federico Ferraro, Christina Fevga, Vincenzo Bonifati, Wim J. Mandemakers, Ahmed Essam Mahfouz, Marcel J. T. Reinders
1citations -
Whole blood transcriptome in long-COVID patients reveals association with lung function and immune response2024 Journal of Allergy and Clinical Immunology article Medicine Long-Term Effects of COVID-19 Open access cited by 2 patents
Jelle M. Blankestijn, Nadia Baalbaki, Somayeh Bazdar, Inés Beekers, Rosanne J.H.C.G. Beijers, Joop P. van den Bergh, +17 more
5citations -
ISA101 and nivolumab for HPV-16 + cancer: updated clinical efficacy and immune correlates of response2022 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access
Luana Guimarães de Sousa, Kimal Rajapakshe, Jaime Rodriguez Canales, Renee L. Chin, Lei Feng, Qi Wang, +12 more
98citations -
Nonsense Mutation in USH2A Exon-13 Activates the Innate Immune Response in Müller Glial Cells2026 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Retinal Development and Disorders Open access
Rossella Valenzano, Xuefei Lu, Andrew J. McDonald, Ioannis Moustakas, Roberta Menafra, Aat A. Mulder, +5 more
2citations -
Comprehensive multi-omics analysis reveals prognostic, immune, and therapeutic signatures of TNFAIP family genes in breast cancer2026 PLoS ONE article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Tahereh Barati, Madiheh Mazaheri Moghaddam, Fatemeh Mokhles, Zohreh Mirzaei, Amir Ebrahimi, Golsa Nayeb Ghanbar Hosseini, +1 more
0citations -
Oncogenic states dictate the prognostic and predictive connotations of intratumoral immune response2020 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access
Jessica P Roelands, Wouter Hendrickx, Gabriele M. Zoppoli, Raghvendra Mall, Mohamad Saad, Kyle D. Halliwill, +17 more
109citations -
Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study2020 Bioinformatics and Biology Insights article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Deepak Mav, Dhiral P. Phadke, Michele R. Balik-Meisner, Bruce Alex Merrick, Scott S. Auerbach, Marije Niemeijer, +7 more
10citations -
Integrating cell interaction with transcription factors to obtain a robust gene panel for prognostic prediction and therapies in cholangiocarcinoma2022 Frontiers in Genetics article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access
Tingjie Wang, Chuanrui Xu, Dan Xu, Xiaofei Yang, Yaxin Liu, Xiujuan Li, +6 more
3citations -
Identification of autophagy‐related genes signature predicts chemotherapeutic and immunotherapeutic efficiency in bladder cancer (BLCA)2021 Journal of Cellular and Molecular Medicine article Medicine Bladder and Urothelial Cancer Treatments Open access
Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
15citations -
Abstract PD5-08: Tumor immune-cell activity assessed by RNAseq is an independent predictor of therapy response and prognosis after neoadjuvant chemotherapy in HER2 negative breast cancer patients - An analysis of the GeparSepto trial2020 Cancer Research conference-abstract Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies cited by 1 patent
Peter Andreas Fasching, Carsten Denkert, Stephen Charles Benz, Karsten Ernst Weber, Christopher W. Szeto, Jan Budczies, +17 more
1citations -
Multi-ancestry genome-wide association study accounting for gene-psychosocial factor interactions identifies novel loci for blood pressure traits2020 Human Genetics and Genomics Advances article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Daokun Sun, Melissa A. Richard, Solomon K. Musani, Thomas W. Winkler, Karen Schwander, Jin Fang Chai, +90 more
15citations -
Inferred Immune-Cell Activity Is an Independent Predictor of HER2-Negative Breast Cancer Prognosis and Response to Paclitaxel-Based Therapy in the GeparSepto Trial2023 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Peter Andreas Fasching, Christopher W. Szeto, Carsten Denkert, Stephen Charles Benz, Karsten Ernst Weber, Patricia Spilman, +18 more
8citations