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Germline genetic contribution to the immune landscape of cancer2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Rosalyn W. Sayaman, Mohamad Saad, Vésteinn Thórsson, Wouter Hendrickx, Jessica P Roelands, Younes Mokrab, +18 more
21citations -
Hypothermic and Normothermic Machine Perfusion Differentially Shape the Renal Cellular Landscape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Organ Transplantation Techniques and Outcomes Open access
Janine Siegle, Dörte Maria Kemper, Runze Zhu, Yiren Yang, Jay Wehenkel, Gishnu Harikumar Parvathy, +9 more
0citations -
The landscape of tertiary lymphoid structures in endometrial cancer revealed through harmonized multi-level transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Marta Requesens, Koen Brummel, Arkajyoti Bhattacharya, Feija Somefun, Nienke van Rooij, Annechien Plat, +10 more
0citations -
Reference-based comparison of adaptive immune receptor repertoires2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Cédric R. Weber, Teresa Rubio, Longlong Wang, Wei Zhang, Philippe Auguste Robert, Rahmad Akbar, +9 more
5citations -
Methylation-Guided Stratification of Colorectal Cancer Reveals Immune Subtypes with Distinct Clinical Outcomes2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation
Eiman I. Ahmed, Raghvendra Mall, Christophe Michel Raynaud, Heba Saadeh, Shimaa Sherif, Rania Alanany, +4 more
0citations -
Multimodal profiling of chordoma immunity reveals distinct immune contextures2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Bone Tumor Diagnosis and Treatments Open access
Siddh van Oost, Debora M. Meijer, Marieke E. Ijsselsteijn, Jessica P Roelands, Ruud van der Breggen, Inge H. Briaire‐de Bruijn, +7 more
1citations -
QUAS-R: Glutamine (Q) Uptake Assay with Single cell Resolution reveals metabolic heterogeneity with immune populations2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Amino Acid Enzymes and Metabolism Open access
Leonard R. Pelgrom, Simon O’Shoughnessy, Sander van Kasteren, David K. Finlay, Linda V. Sinclair
5citations -
Eicosapentaenoic acid induces an anti-inflammatory transcriptomic landscape in T cells implicating a pathway independent of triglyceride lowering in cardiovascular risk reduction2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Nursing Fatty Acid Research and Health Open access
Nathalie A. Reilly, Koen F. Dekkers, Jeroen Molenaar, Sinthuja Arumugam, Thomas B. Kuipers, Yavuz Ariyürek, +3 more
0citations -
Self-Supervised Learning Reveals Clinically Relevant Histomorphological Patterns for Therapeutic Strategies in Colon Cancer2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access cited by 1 patent
Bojing Liu, Meaghan Polack, Nicolas Coudray, Adalberto Claudio Quiros, Theodore Sakellaropoulos, A. Stijn L. P. Crobach, +5 more
8citations -
Phage-display immunoprecipitation sequencing reveals distinct antibody repertoire patterns across a rural-urban gradient2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Monoclonal and Polyclonal Antibodies Research Open access
Ross F Laidlaw, Gabriel Innocenti, Thomas J. Vogl, Moustapha Mbow, Maria Yazdanbakhsh, Mikhael D. Manurung
0citations -
Immunogenomic, single-cell and spatial dissection of CD8 + T cell exhaustion reveals critical determinants of cancer immunotherapy2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Stefan Naulaerts, Daniel Borràs, Asier Antoranz, Julie Messiaen, Yannick Van Herck, Lendert Gelens, +15 more
7citations -
Distinct antibody-based signatures and functionality distinguish latent and active pediatric tuberculosis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Nadège Nziza, Wonyeong Jung, Tina Chen, Yixiang Deng, Kees L. M. C. Franken, Tom H. M. Ottenhoff, +10 more
2citations -
Ageing of the Upper Airway Epithelial Niche Limits Tissue-Resident T Cell Immunity2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Wesley Huisman, Lisa A. King, Youvika Singh, Alicia C. de Kroon, Rosanne A. M. Steenbergen, Iris van der Valk, +19 more
0citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
Correcting differential gene expression analysis for cyto-architectural alterations in substantia nigra of Parkinson’s disease patients reveals known and potential novel disease-associated genes and pathways2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Parkinson's Disease Mechanisms and Treatments Open access
Federico Ferraro, Fevga Christina, Bonifati Vincenzo, Mandemakers Wim, Mahfouz Ahmed, Reinders Marcel
0citations -
A proteomic map of B cell activation and its shaping by mTORC1, MYC and iron2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology PI3K/AKT/mTOR signaling in cancer Open access
Olivia James, Linda V. Sinclair, Nadejda Lefter, Andrew J.M. Howden
1citations -
The genetics and epidemiology of N- and O- IgA glycomics2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Alessia Visconti, Niccolò Rossi, Albert Bondt, Agnes L. Hipgrave Ederveen, Gaurav Thareja, Carolien A. M. Koeleman, +8 more
0citations -
Revisiting colorectal cancer tumorigenesis with spatially-resolved gene expression profiling2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jessica P Roelands, Manon van der Ploeg, Hao Dang, Jurjen J. Boonstra, James C.H. Hardwick, Lukas J.A.C. Hawinkels, +2 more
1citations -
Atherosclerotic plaque iron accumulation characterizes a distinct phase of intra-plaque haemorrhage and is associated with inflammation and remodelling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Elias B Wieland, Aniek Plug, Benjamin Balluff, Marion J. Gijbels, Lele Han, Bryn Flinders, +7 more
0citations