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Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets2024 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, +2 more
33citations -
Learning to Segment Fine Structures Under Image-Level Supervision With an Application to Nematode Segmentation2022 Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society conference-paper Computer Science Advanced Neural Network Applications
Long Chen, Martin Strauch, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, Dorit Merhof
2citations -
Community-developed checklists for publishing images and image analyses2023 Nature Methods article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Christopher Schmied, Sergiy Avilov, Gert‐Jan Bakker, Cristina Bertocchi, Johanna Bischof, Ulrike Boehm, +47 more
94citations -
Fusenet: Self-Supervised Dual-Path Network For Medical Image Segmentation2024 IEEE International Symposium on Biomedical Imaging (ISBI) conference-paper Computer Science Medical Image Segmentation Techniques
Amirhossein Kazerouni, Sanaz Karimijafarbigloo, Reza Azad, Yury Velichko, Ulaş Bağcı, Dorit Merhof
4citations -
UTILE-Gen: Automated Image Analysis in Nanoscience Using Synthetic Dataset Generator and Deep Learning2023 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
André Colliard-Granero, Jenia Jitsev, Michael Hermann Eikerling, Kourosh Malek, Mohammad J. Eslamibidgoli
0citations -
Cooperative AI training for cardiothoracic segmentation in computed tomography: An iterative multi-center annotation approach2024 European Journal of Radiology article Computer Science Medical Image Segmentation Techniques Open access
Bianca C Lassen-Schmidt, Bettina Baeßler, Matthias Gutberlet, Josephine Berger, Jan Michael Brendel, Andreas Michael Bucher, +17 more
4citations -
Continual learning in medical image analysis: A comprehensive review of recent advancements and future prospects2025 Medical Image Analysis article Computer Science Domain Adaptation and Few-Shot Learning Open access
Joohi Chauhan, Afshin Bozorgpour, Boqiang Huang, Reza Azad, Dorit Merhof
25citations -
PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
3citations -
PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics2024 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Noel F.C.C. de Miranda
10citations -
A Correlative Microscopy Dataset for Multimodal Data Fusion and Image Matching in Materials Science2026 Scientific Data data-paper Computer Science Advanced Image and Video Retrieval Techniques Open access
Ali Riza Durmaz, James D. Lamb, Kamilla Zaripova, Madeline Vailhe, Julia T. Pürstl, Justine Schulte, +3 more
1citations -
UTILE-Gen: Automated Image Analysis in Nanoscience Using Synthetic Dataset Generator and Deep Learning2023 ACS Nanoscience Au article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
André Colliard-Granero, Jenia Jitsev, Michael Hermann Eikerling, Kourosh Malek, Mohammad J. Eslamibidgoli
12citations -
A Pragmatic Note on Evaluating Generative Models with Fréchet Inception Distance for Retinal Image Synthesis2025 arXiv (Cornell University) preprint Computer Science Generative Adversarial Networks and Image Synthesis Open access
Yuli Wu, Fucheng Liu, Rüveyda Yilmaz, Henning Konermann, Peter Walter, Johannes Stegmaier
0citations -
Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations2023 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Șerban Vădineanu, Daniël M. Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
3citations