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fluxTrAM: Integration of tracer-based metabolomics data into atomically resolved genome-scale metabolic networks for metabolic flux analysis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Luojiao Huang, German Preciat, Jesús Alarcón-Gil, Edinson Lucumi Moreno, Agnieszka B. Wegrzyn, Ines Thiele, +4 more
1citations -
Mixed-Integer Optimization for Loopless Flux Distributions in Metabolic Networks2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
João Dionísio, Tim Donkiewicz, Leon Eifler, Ambros Gleixner, Katrin Halbig, Ivo Hedtke, +9 more
89citations -
Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered E. coli2024 Microorganisms article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mitzi de la Cruz, Flavio Kunert, Hilal Taymaz‐Nikerel, Juan‐Carlos Sigala, Guillermo Gosset, Jochen Büchs, +1 more
6citations -
Acetol biosynthesis enables NADPH balance during nitrogen limitation in engineered Escherichia coli2025 Microbial Cell Factories article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Suresh Sudarsan, Philipp Demling, Emre Özdemir, Philip Mennicken, Joerg Martin Buescher, Guido Meurer, +2 more
3citations -
Effects of Measurement Height and Low-Pass-Filtering Corrections on Eddy-Covariance Flux Measurements Over a Forest Clearing with Complex Vegetation2022 Boundary-Layer Meteorology article Environmental Science Plant Water Relations and Carbon Dynamics Open access
Oliver Reitz, Alexander Graf, Marius Schmidt, Gunnar Ketzler, Michael Leuchner
9citations -
Cardinality optimization in constraint-based modelling: application to human metabolism2023 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Ronan M. T. Fleming, Hulda S. Haraldsdóttir, Phan Tu Vuong, Thomas Hankemeier, Ines Thiele
10citations -
Comparison of Isomerase and Weimberg Pathway for γ-PGA Production From Xylose by Engineered Bacillus subtilis2020 Frontiers in Bioengineering and Biotechnology article Biochemistry, Genetics and Molecular Biology Biopolymer Synthesis and Applications Open access
Birthe Halmschlag, Kyra Hoffmann, René Hanke, Sastia Prama Putri, Eiichiro Fukusaki, Jochen Büchs, +1 more
34citations -
Itaconic acid production by co‐feeding of Ustilago maydis : A combined approach of experimental data, design of experiments, and metabolic modeling2024 Biotechnology and Bioengineering article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anita L. Ziegler, Lena Ullmann, Manuel Boßmann, Karla Stein, Ulf W. Liebal, Alexander Mitsos, +1 more
7citations -
Co-feeding enhances the yield of methyl ketones2023 Journal of Industrial Microbiology & Biotechnology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anita L. Ziegler, Carolin Grütering, Leon Poduschnick, Alexander Mitsos, Lars M. Blank
6citations -
A multiscale spatiotemporal model including a switch from aerobic to anaerobic metabolism reproduces succession in the early infant gut microbiota2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
David M. Versluis, Ruud Schoemaker, Ellen Looijesteijn, Daniël Muysken, Prescilla V. Jeurink, Marcel Paques, +2 more
2citations -
Itaconic acid production by co-feeding of Ustilago maydis : a combined approach of experimental data, design of experiments and metabolic modeling2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anita L. Ziegler, Manuel Boßmann, Karla Stein, Ulf W. Liebal, Alexander Mitsos, Lars M. Blank
0citations -
Combined metabolic modeling and experimental data for enhanced biotechnological production2023 Computer-aided chemical engineering/Computer aided chemical engineering book-chapter Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction
Anita L. Ziegler, Melanie Filbig, Johannes Parschau, Till Tiso, Lars M. Blank, Alexander Mitsos
0citations -
Multi-omic data fusion reveals the in vivo enzyme kinetics of Vibrio natriegens at the genome-scale2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
St. Elmo Wilken, Martin Beyß, Miroslav Kratochvíl, Alexa Grebel, Karen Methling, Anja Stefanski, +7 more
0citations -
Insights into enhanced, divergent, and additive responses to single and combined hypoxia-salt stress2026 BMC Plant Biology article Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Angelina Jordine, Julia Alt, Christina Bonn, Pia Nolte, Joost Thomas van Dongen, Lisa Fürtauer
0citations