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ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling2022 iScience article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Barbara Scalvini, Helmut Schießel, Anatoly Golovnev, Alireza Mashaghi
9citations -
Circuit Topology Approach for the Comparative Analysis of Intrinsically Disordered Proteins2023 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Barbara Scalvini, Vahid Sheikhhassani, Nadine van de Brug, Laurens W.H.J. Heling, Jeremy D. Schmit, Alireza Mashaghi
10citations -
End-to-end quantum algorithm for topology optimization in structural mechanics2026 Quantum Science and Technology article Computer Science Quantum Computing Algorithms and Architecture Open access
Leonhard Hölscher, Oliver Ahrend, Lukas Karch, Carlotta L'Estocq, Marc Andreu Marfany, Tobias Stollenwerk, +2 more
1citations -
Phosphorylation-Regulated Conformational Diversity and Topological Dynamics of an Intrinsically Disordered Nuclear Receptor2025 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Vasily Akulov, Alba Jiménez‐Panizo, Eva Estébanez‐Perpiñá, John van Noort, Alireza Mashaghi
6citations -
Topological Investigation of Protein Folding and Intrinsic Disorder2026 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Muriel Elizabeth Hammond, Vasily Akulov, John van Noort, Laura B. Zwep, Alireza Mashaghi
0citations