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A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Fasciola hepatica Fatty Acid Binding Protein 1 modulates T cell polarization by promoting dendritic cell thrombospondin-1 secretion without affecting metabolic homeostasis in obese mice2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Parasites and Host Interactions Open access
Anna Zawistowska‐Deniziak, Joost M. Lambooij, Alicja Kalinowska, Thiago A. Patente, Maciej Łapiński, Hendrik J.P. van der Zande, +9 more
0citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
The biomolecular profiles of extracellular vesicles from odontogenic stem cell lines depict donor-dependent differences and emphasize their therapeutic and regenerative potential2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Yong Xu, Alp Sarisoy, Eva Miriam Buhl, Julian Gonzalez‐Rubio, Anja Lena Thiebes, Sandra Fuest, +3 more
1citations -
Interactions in CSF1-driven Tenosynovial Giant Cell Tumors2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Musculoskeletal synovial abnormalities and treatments Open access
David G.P. van IJzendoorn, Magdalena Matusiak, Gregory W. Charville, Geert Spierenburg, Sushama Varma, Deana R.C. Colburg, +10 more
3citations -
Identification of SENP7 and UTF1 / VENTX as new loci influencing clustered protocadherin methylation across blood and brain using a genome-wide association study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Yunfeng Liu, Maja Vukić, Eilis J. Hannon, Hailiang Mei, Jonathan S. Mill, Lucia Daxinger, +1 more
1citations -
Mechanotranscriptomic Profiling of Breast Cancer Cells Intravasated from Engineered Microtumors2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
René Krüger, Miguel Fuentes‐Chandía, Helly Atiya, Angeles De La Cruz, Sadaf Pashapour, Aldo Roberto Boccaccini, +5 more
0citations -
Proteomics reveals unique identities of human TGF-β-induced and thymus-derived CD4 + regulatory T cells2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Mark Mensink, Ellen Schrama, Eloy Cuadrado, Maartje van den Biggelaar, Derk Amsen, Sander de Kivit, +1 more
1citations -
Human DC3 Antigen Presenting Dendritic Cells from Induced Pluripotent Stem Cells2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access
Taiki Satoh, Marcelo A. S. Toledo, Janik Boehnke, Kathrin Olschok, Niclas Flosdorf, Katrin Götz, +8 more
1citations
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