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Human pluripotent stem cell-derived cardiomyocytes align under cyclic strain when guided by cardiac fibroblasts2022 APL Bioengineering article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Dylan Mostert, Bart G. W. Groenen, Leda Klouda, Robert C. J. J. Passier, Marie‐José Goumans, Nicholas A. Kurniawan, +1 more
14citations -
Identifying commonalities between cell lines and tumors at the single cell level using Sobolev Alignment of deep generative models2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Soufiane M. C. Mourragui, Joseph C. Siefert, Marcel J. T. Reinders, Marco Loog, Lodewyk F.A. Wessels
2citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
1citations -
Human pluripotent stem cell-derived cardiomyocytes align under cyclic strain when guided by cardiac fibroblasts2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Dylan Mostert, Bart G. W. Groenen, Leda Klouda, Robert C. J. J. Passier, Marie‐José Goumans, Nicholas A. Kurniawan, +1 more
1citations -
Analysis of flow-induced transcriptional response and cell alignment of different sources of endothelial cells used in vascular tissue engineering2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Diana M. Rojas‐González, Aaron Babendreyer, Andreas Ludwig, Petra Mela
15citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Kirti Biharie, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
6citations -
scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Yang Xu, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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scDecorr: feature decorrelation based representation learning enables self-supervised alignment of multiple single-cell experiments2026 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ritabrata Sanyal, Hyojin Kim, Rafael Kramann, Sikander Hayat
0citations -
How cells align to structured collagen fibrils: A hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions1citations
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How cells align to structured collagen fibrils: a hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions7citations
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Eumelanin‐Coated Aligned PLA Electrospun Microfibers to Guide SH‐SY5YCells Spreading, Alignment, And Maturation2023 Advanced Materials Interfaces article Materials Science Electrospun Nanofibers in Biomedical Applications Open access
Anna Mariano, Ines Fasolino, Nikita Bhupesh Dinger, Claudia Latte Bovio, Irene Bonadies, Alessandro Pezzella, +3 more
5citations -
Engineering Anisotropic Cell Models: Development of Collagen Hydrogel Scaffolds with Magneto‐Responsive PEG Microgels for Tissue Engineering Applications2024 Advanced Materials Technologies article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Ana L. Castro, Sitara Vedaraman, Tamás Haraszti, Mário Adolfo Barbosa, Raquel Madeira Gonçalves, Laura De Laporte
23citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Data on: Impact of neurite alignment on organelle motion2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Maria Mytiliniou, Joeri A. J. Wondergem, Thomas Schmidt, Doris Heinrich
0citations -
Data on: Impact of neurite alignment on organelle motion2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Maria Mytiliniou, Joeri A. J. Wondergem, Thomas Schmidt, Doris Heinrich
0citations -
Comparing individual-based models of collective cell motion in a benchmark flow geometry2023 Soft Matter article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Carine P. Beatrici, Cassio A. Kirch, Silke Henkes, François Graner, Leonardo G. Brunnet
12citations -
Effects of MRI on an Injectable Hydrogel with Magnetically Alignable Microstructures for Oriented Cell Growth2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Yas Oloumi Yazdi, Tanya J. Bennet, Andrew C. Yung, Kirsten Bale, Alex Pieters, Iryna Liubchak, +5 more
0citations