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Papers matching “biomolecular folding” 16

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A Circuit Topology Approach to Categorizing Changes in Biomolecular Structure
2020 Frontiers in Physics article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access

Otto Schullian, Jaie C. Woodard, Arash Tirandaz, Alireza Mashaghi

20

citations
MSstatsBioNet: Integrating Statistical Analyses with Prior Knowledge Biomolecular Networks for Quantitative Proteomics and Phosphoproteomics
2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

Anthony Wu, Devon Kohler, Pruthvi Prakash Navada, Julia E. Robbins, Gabriel E. Boyle, Alex Boshart, +7 more

0

citations
Topological Analysis of Folded Linear Molecular Chains
2022 Springer eBooks book-chapter Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics

Anatoly Golovnev, Alireza Mashaghi

6

citations
Enhancement of the coloring invariant for folded molecular chains
2021 Journal of Mathematical Physics article Mathematics Geometric and Algebraic Topology Open access

3

citations
RNA topology: From simple loops to complex circuits — A review
2026 International Journal of Biological Macromolecules article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access

Reza Rezazadegan, Eugene F. Baulin, Alireza Mashaghi

1

citations
RNA topology: from simple loops to complex circuits
2026 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access

Reza Rezazadegan, Eugene F. Baulin, Alireza Mashaghi

0

citations
Circuit topology predicts pathogenicity of missense mutations
2022 Proteins Structure Function and Bioinformatics article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access

Jaie C. Woodard, Sumaiya Iqbal, Alireza Mashaghi

10

citations
Coloring Invariant for Topological Circuits in Folded Linear Chains
2021 Symmetry article Mathematics Geometric and Algebraic Topology Open access

Jose Ceniceros, Mohamed Elhamdadi, Alireza Mashaghi

5

citations
Circuit Topology for Bottom-Up Engineering of Molecular Knots
2021 Symmetry article Mathematics Geometric and Algebraic Topology Open access

Anatoly Golovnev, Alireza Mashaghi

7

citations
Circuit topology for bottom-up engineering of molecular knots
2021 arXiv (Cornell University) preprint Mathematics Geometric and Algebraic Topology Open access

Anatoly Golovnev, Alireza Mashaghi

0

citations
Determining structure and action mechanism of LBF14 by molecular simulation
2021 Journal of Biomolecular Structure and Dynamics article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics

Florian Solbach, Austen Bernardi, Shivani Bansal, Madhu S. Budamagunta, Lukas Krep, Kai O. Leonhard, +3 more

2

citations
Supramolecular DNA-based catalysis in organic solvents
2024 iScience article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access

Gurudas Chakraborty, Konstantin Balinin, Rafael del Villar‐Guerra, Meike Emondts, Giuseppe Portale, Mark Loznik, +4 more

2

citations
CDDLeiden/COFOLDER: Version 0.1.0
2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access

Remco L. van den Broek

0

citations
CDDLeiden/COFOLDER: Version 0.1.0
2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access

Remco L. van den Broek, Basem A. Khalil

0

citations
Probing Noncovalent Interactions by Fast Magic‐Angle Spinning NMR at 100 kHz and More
2024 ChemPhysChem article Chemistry Advanced NMR Techniques and Applications Open access

Nina Schröder, Ettore Bartalucci, Thomas Wiegand

14

citations
“A custome lothsome”: Investigating the association between tobacco consumption and respiratory inflammation in two post-medieval English populations (c. CE 1500–1855)
2025 PLoS ONE article Arts and Humanities Paleopathology and ancient diseases Open access

Anna M. Davies‐Barrett, Maia Casna, Sarah A. Inskip

3

citations

16 results