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Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: a case study on beach meiofauna2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Jan‐Niklas Macher, Alejandro Martínez, Sude Çakir, Pierre‐Etienne Cholley, Eleni Christoforou, Marco Curini Galletti, +11 more
3citations -
Barcoding-inferred biodiversity of shallow-water Indo-Pacific demosponges2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access
Dirk Erpenbeck, Adrian Galitz, Michael L. Berumen, Gabriele Büttner, Cécile Debitus, Moritz Dirnberger, +17 more
1citations -
In utero barcoding of mouse mesoderm reveals the clonal architecture of organ mesenchyme2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access
Jingyan He, Johan Lorentz, Agustín A. Corbat, Sergey V. Isaev, Raphaël Mauron, Sandra de Haan, +16 more
0citations -
Combi-Seq: Multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lukas Mathur, Bence Szalai, Ramesh Utharala, Martine Ballinger, Jonathan J. M. Landry, Michaël Ryckelynck, +3 more
4citations -
DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Hematopoietic Stem Cell Transplantation Open access
Jos H. M. Urbanus, Jason Cosgrove, Joost B. Beltman, Yuval Elhanati, Rafael de Andrade Moral, Cécile Conrad, +13 more
1citations -
DNA metabarcoding successfully quantifies relative abundances of arthropod taxa in songbird diets: a validation study using camera-recorded diets2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Yvonne I. Verkuil, Marion Nicolaus, Richard Ubels, Maurine W. Dietz, Jelmer M. Samplonius, Annabet Galema, +3 more
6citations -
Natural killer cell cytotoxicity shapes the clonal evolution of B cell leukaemia2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune Cell Function and Interaction Open access
Michelle C. Buri, Mohamed R. Shoeb, Aleksandr Bykov, Peter Repiščák, Hayeon Baik, Alma Dupanovic, +17 more
0citations -
Naturalized Dolichogenidea gelechiidivoris Marsh (Hymenoptera: Braconidae) complement the resident parasitoid complex of Tuta absoluta (Meyrick) (Lepidopera:Gelechiidae) in Spain2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Insect-Plant Interactions and Control Open access
Carmen Denis, Jordi Riudavets, Òscar Alomar, Núria Agustí, Helena Gonzalez‐Valero, Martina Cubí, +4 more
4citations -
The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Jan‐Niklas Macher, Katerina Drakou, Athina Papatheodoulou, Berry van der Hoorn, Marlen Ines Vasquez
1citations -
Molecular phylogenetics of the superfamily Stromboidea (Caenogastropoda): new insights from increased taxon sampling2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Evolution and Paleontology Studies Open access
Alison R. Irwin, Philippe Bouchet, J. Alistair Crame, Elizabeth M. Harper, Gijs C. Kronenberg, Ellen E. Strong
0citations -
Handling of Spurious Sequences Affects the Outcome of High-Throughput 16S rRNA Gene Amplicon Profiling2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Thomas Clavel, Sandra Reitmeier, Thomas CA Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, +5 more
7citations -
Meiofauna as Sentinels of Beach Ecosystems: A Quantitative Review of Gaps and Opportunities in Beach Meiofauna Research2024 SSRN Electronic Journal preprint Earth and Planetary Sciences Marine Biology and Ecology Research Open access
Alejandro Martínez, Sören Kohler, Marta García‐Cobo, Márcia Neunschwander Kurtz, Diego Fontaneto, Jan‐Niklas Macher
2citations -
scRIPT: a rapid, high-coverage single-cell lineage-tracing method applied to the hematoendothelial differentiation of embryonic stem cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Rıdvan Çeti̇n, Eric M. Bindels, Jente van Staalduinen, Lucas Kuijpers, Giulia Picco, Mathijs Arnoud Sanders, +6 more
0citations -
Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell epitope mapping2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine SARS-CoV-2 and COVID-19 Research Open access
Felix Schreibing, Monica Toft Hannani, Fabio Ticconi, Eleanor Fewings, James Shiniti Nagai, Matthias Begemann, +18 more
7citations -
Systematic annotation of orphan RNAs reveals blood-accessible molecular barcodes of cancer identity and cancer-emergent oncogenic drivers2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Jeffrey Wang, Jung Min Suh, Brian J Woo, Albertas Navickas, Kristle Garcia, Keyi Yin, +10 more
7citations -
Barcode-free hit discovery from massive libraries enabled by automated small molecule structure annotation2025 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Chemical Synthesis and Analysis Open access
Edith van der Nol, Nicola Haupt, Benthe A. M. Smit, Martin Andre Hoffmann, Martin S. Engler, Marcus Ludwig, +8 more
0citations -
CycloSELs – Massive Screening Platform of barcode-free macrocycle libraries enables the identification of cell-penetrating PPI inhibitors2025 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Chemical Synthesis and Analysis Open access
J. Miguel Mata, Jingming Liu, Marije Havermans, Sean M. McKenna, Edith van der Nol, Ruud Delwel, +1 more
0citations -
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations