Papers matching “bacterial genome annotation” 10
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bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Guillermo Guerrero-Egido, Adrián Pintado, Kevin M. Bretscher, Luisa M. Arias-Giraldo, Joseph Nathaniel Paulson, Herman P. Spaink, +6 more
29citations -
Supplementary dara for "Genome-inspired cultivation of bacteria from deep-sea sponge Geodia barretti"2026 Zenodo (CERN European Organization for Nuclear Research) supplementary-materials Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access
Pavlo Hrab, M Muller, Sophie Elise Smit, Michelle Schorn, Catarina Loureiro, Marnix H. Medema, +1 more
0citations -
Supplementary dara for "Genome-inspired cultivation of bacteria from deep-sea sponge Geodia barretti"2026 Zenodo (CERN European Organization for Nuclear Research) supplementary-materials Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access
Pavlo Hrab, M Muller, Sophie Elise Smit, Michelle Schorn, Catarina Loureiro, Marnix H. Medema, +1 more
0citations -
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages2020 Environmental Microbiology article Environmental Science Bacteriophages and microbial interactions Open access
Cédric Lood, Katarzyna M. Danis-Wlodarczyk, Bob G. Blasdel, Ho Bin Jang, Dieter Vandenheuvel, Yves Briers, +4 more
52citations -
microSTRESSdb: A curated database for prioritizing bacteria alleviating plant abiotic stress2026 Microbiological Research article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
P. Nuijten, K. Bretscher, R. Cazorla, J.M. Raaijmakers, Guerrero Guillermo, A. Ossowicki, +1 more
0citations -
Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH2025 Nature Communications article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Yuze Li, Mingxue Sun, Jos M. Raaijmakers, Liesje Mommer, Fusuo S. Zhang, Chunxu Song, +1 more
18citations -
Predicting Rhizosphere Competence Related Catabolic Gene Clusters in plant-associated bacteria with RhizoSMASH2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Yuze Li, Mingxue Sun, Jos M. Raaijmakers, Liesje Mommer, Fusuo S. Zhang, Chunxu Song, +1 more
2citations -
Refining the transcriptional landscapes for distinct clades of virulent phages infecting pseudomonas aeruginosa2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Leena Putzeys, Laura Wicke, Maarten Boon, Vera van Noort, Jörg Vogel, Rob Lavigne
1citations
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