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Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection
Sam Nooij, Karuna E.W. Vendrik, Romy Daniëlle Zwittink, Quinten R. Ducarmon, Josbert J. Keller, Ed J. Kuijper, +1 more
1citations -
Harzianic Acid has multi-target antimicrobial activity against Gram-Positive Bacteria2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Xudong Ouyang, Jelmer Hoeksma, Wouter A. G. Beenker, Samantha L. van der Beek, Jeroen den Hertog
5citations -
Identification and characterization of diverse OTU deubiquitinases in bacteria2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Alexander F. Schubert, Justine V. Nguyen, Tyler G. Franklin, Paul P. Geurink, Cameron G. Roberts, Daniel J. Sanderson, +5 more
5citations -
Identification of kinase inhibitors as potential host-directed therapies for intracellular bacteria2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Robin H. G. A. van den Biggelaar, Kimberley V. Walburg, Susan J. F. van den Eeden, Cassandra L. R. van Doorn, Eugenia Meiler, Alex S. de Ries, +4 more
3citations -
Gram-positive bacteria secrete RNA aptamers to activate human STING for IL-1β release2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Inflammasome and immune disorders Open access
Shivalee N. Duduskar, Mohamed Ghait, Martin Westermann, Huijuan Guo, Anuradha Ramoji, Christoph Sponholz, +11 more
0citations -
Phyletic distribution and diversification of the Phage Shock Protein stress response system in bacteria and archaea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Philipp F. Popp, Vadim M. Gumerov, Ekaterina P. Andrianova, Lisa Bewersdorf, Thorsten Mascher, Igor B. Zhulin, +1 more
5citations -
Predicting Rhizosphere Competence Related Catabolic Gene Clusters in plant-associated bacteria with RhizoSMASH2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Yuze Li, Mingxue Sun, Jos M. Raaijmakers, Liesje Mommer, Fusuo S. Zhang, Chunxu Song, +1 more
2citations -
High-throughput profiling of drug interactions in Gram-positive bacteria2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Elisabetta Cacace, Vladislav Kim, Michael R. Knopp, Manuela Tietgen, Amber Brauer-Nikonow, Kemal İnecik, +13 more
2citations -
High resolution reconstruction of a Jumbo bacteriophage infecting capsulated bacteria using hyperbranched tail fibers2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Ruochen Ouyang, Ana Rita Costa, C. Keith Cassidy, Aleksandra Otwinowska, Vera C. J. Williams, Agnieszka Łątka, +6 more
1citations -
Engineered bacteria that self-assemble “bioglass” polysilicate coatings display enhanced light focusing2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Materials Science Diatoms and Algae Research Open access
Lynn M. Sidor, Michelle M. Beaulieu, Ilia L. Rasskazov, B. Cansu Acarturk, Jie Ren, Lycka Kamoen, +6 more
1citations -
Using Cupriavidus necator H16 to provide a roadmap for increasing electroporation efficiency in non-model bacteria2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Matteo Vajente, Riccardo Clerici, Hendrik Ballerstedt, Lars M. Blank, Sandy Schmidt
5citations -
DNA uptake by cell wall-deficient bacteria reveals a putative ancient macromolecule uptake mechanism2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit A. de Beer, Deniz Daviran, +5 more
4citations -
DNA uptake by cell wall-deficient bacteria reveals a putative ancient macromolecule uptake mechanism2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Marit A. de Beer, Deniz Daviran, Rona Roverts, +4 more
0citations -
Broad diversity of human gut bacteria accessible via a traceable strain deposition system2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Selina Nüchtern, Nicole Simone Treichel, Marko Baloh, +28 more
13citations -
Secondary bile acid production by gut bacteria promotes Western diet-associated colorectal cancer2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Esther Wortmann, Annika Oßwald, David Wylensek, Stephanie Kuhls, Olivia I. Coleman, Quinten R. Ducarmon, +17 more
4citations -
Paecilomycone inhibits quorum sensing in Gram-negative bacteria2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial biofilms and quorum sensing Open access cited by 2 patents
Wouter A. G. Beenker, Jelmer Hoeksma, Marie Bannier-Hélaouët, Hans C. Clevers, Jeroen den Hertog
1citations -
Ubiquitination-dependent manipulation of host recycling pathways by the intracellular bacteria Salmonella: Salmonella exploits USP32 to coordinate Rab14 and Rab11 recycling pathways for intracellular survival0citations
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Integrating Metal-Organic Framework Zif-8 with Green Modifier Empowered Bacteria with Improved Bioremediation2023 SSRN Electronic Journal preprint Environmental Science Microbial bioremediation and biosurfactants Open access
Mina Liu, Lei Zhang, Rongrong Yang, Haiyang Cui, Yanan Li, Xiujuan Li, +1 more
0citations -
ICP1 bacteriophage treatment antagonizes colonization of the zebrafish larval intestine by Vibrio cholerae2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Adam Sidi Mabrouk, Jamie S. Depelteau, Chiara Foini, Susanne Brenzinger, Ronald W.A.L. Limpens, Manuel Majrouh, +2 more
2citations -
Bacteriophages targeting protective commensals impair resistance against Salmonella Typhimurium infection in gnotobiotic mice2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Alexandra von Strempel, Anna S. Weiß, Johannes Wittmann, Marta Salvado Silva, Diana Ring, Esther Wortmann, +4 more
2citations -
Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Mark Lyng, Johan Peter Bredal Jørgensen, Morten Dencker Schostag, Scott A. Jarmusch, D. Aguilar, Carlos N. Lozano-Andrade, +1 more
2citations -
A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana microbiota2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Paloma Durán, Anja Reinstädler, Anna Lisa Rajakrut, Masayoshi Hashimoto, Rubén Garrido‐Oter, Paul Schulze‐Lefert, +1 more
0citations