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MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
No Free Lunch in Annotation Either: An Objective Evaluation of Foundation Models for Streamlining Annotation in Animal Tracking2025 IEEE International Symposium on Biomedical Imaging (ISBI) conference-paper Computer Science Video Surveillance and Tracking Methods
Emil Mededovic, Valdy Laurentius, Yuli Wu, Marcin Kopaczka, Chen Zhu, Mareike Schulz, +2 more
0citations -
No Free Lunch in Annotation either: An objective evaluation of foundation models for streamlining annotation in animal tracking2025 arXiv (Cornell University) preprint Environmental Science Species Distribution and Climate Change Open access
Emil Mededovic, Valdy Laurentius, Yuli Wu, Marcin Kopaczka, Chen Zhu, Mareike Schulz, +2 more
0citations -
SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Fu Zhu, Rafael Kramann, Sikander Hayat, +1 more
0citations -
Reducing manual workload in CT and MRI annotation with the Segment Anything Model 22026 BMC Medical Imaging article Medicine Artificial Intelligence in Healthcare and Education Open access
Leo Misera, Sven Nebelung, Zunamys Itzell Carrero, Keno K. Bressem, Marta Ligero, Jens‐Peter Kühn, +3 more
0citations -
OS02.6.A MICCAI BRAIN TUMOR SEGMENTATION - METASTASES (BRATS-METS) 2025 LIGHTHOUSE CHALLENGE: COMPETITIVE ENVIRONMENT FOR THE DEVELOPMENT OF ROBUST AUTOMATIC SEGMENTATION ALGORITHMS FOR PRE- AND POST-TREATMENT BRAIN METASTASES2025 Neuro-Oncology conference-abstract Neuroscience Brain Tumor Detection and Classification Open access
Nikolay Yordanov, Raisa Amiruddin, Ahmed W. Moawad, Athanasios Gkampenis, Pascal Fehringer, Fabian Umeh, +14 more
0citations -
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud2024 SoftwareX software-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt, Oliver Neumann, Hanno Scharr, Dietrich Kohlheyer, +2 more
11citations -
Improvement of Collision Avoidance Systems in Rural Rail Traffic with Synthetic Data2025 IEEE International Automated Vehicle Validation Conference (IAVVC) conference-paper Computer Science Advanced Neural Network Applications
Friedrich Betz, Julian Eichenbaum, Yannick Otten, Simon Klamt, Raphael Pfaff, Ingrid Scholl
0citations