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Complementary Use of Cultivation and High-Throughput Amplicon Sequencing Reveals High Biodiversity Within Raw Milk Microbiota2020 Frontiers in Microbiology article Agricultural and Biological Sciences Milk Quality and Mastitis in Dairy Cows Open access
Franziska Breitenwieser, Etienne V. Doll, Thomas Clavel, Siegfried Scherer, Mareike Wenning
37citations -
Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach2023 ISME Communications article Environmental Science Microbial Community Ecology and Physiology Open access
Xinming Xu, Lasse Johan Dyrbye Nielsen, Lijie Song, Gergely Maróti, Mikael Lenz Strube, Ákos T. Kovács
21citations -
Deep-amplicon sequencing of the complete beta-tubulin gene in Trichuris trichiura before and after albendazole treatment2024 International Journal for Parasitology Drugs and Drug Resistance article Immunology and Microbiology Parasites and Host Interactions Open access
Javier Gandasegui, Berta Grau-Pujol, Valdemiro Novela, Osvaldo Muchisse, María Cambra-Pellejà, Anélsio Cossa, +9 more
3citations -
Multicenter In-House Evaluation of an Amplicon-Based Next−Generation Sequencing Panel for Comprehensive Molecular Profiling2025 Molecular Diagnosis & Therapy article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Eloisa Jantus Lewintre, Alessandra Rappa, Dina Ruano, Demi van Egmond, Sandra Gallach, Dilce Gozuyasli, +7 more
7citations -
Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics2021 mSystems article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Vittorio Tracanna, Adam Ossowicki, Marloes L. C. Petrus, Sam Overduin, Barbara R. Terlouw, George Lund, +7 more
56citations -
219P Multicentric evaluation of amplicon-based next-generation sequencing solution for local comprehensive molecular tumor profiling2023 Annals of Oncology article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Eloisa Jantus Lewintre, Alessandra Rappa, Dina Ruano, S. Gallach Garcia, Ludovic Lacroix, Karl Kashofer, +2 more
0citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
0citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 ISME Communications article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
181citations -
Targeted VNTR long read sequencing resolves a diagnostic bottleneck in ADTKD and detects de novo ADTKD-MUC12026 Kidney International article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Andrea Wenzel, Björn Reusch, Karl Xaver Knaup, Nikola Zagorec, Margareta Fištrek Prlić, Kerstin Becker, +8 more
1citations -
A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-22023 European Journal of Clinical Microbiology & Infectious Diseases article Medicine SARS-CoV-2 detection and testing Open access
Ellen C. Carbo, Kees Mourik, Stefan A. Boers, Bas B. Oude Munnink, David F. Nieuwenhuijse, Marcel Jonges, +10 more
33citations -
Immunohistochemistry and Next-generation Sequencing Are Complementary Tests in Identifying PTEN Abnormality in Endometrial Carcinoma Biopsies2021 International Journal of Gynecological Pathology article Medicine Endometrial and Cervical Cancer Treatments
Linyuan Wang, Anna Piskorz, Tjalling Bosse, Mercedes Jimenez‐Liñan, Brian Rous, C. Blake Gilks, +3 more
17citations -
DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study2025 mSystems article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Matthew T. F. Lamaudière, Jack Hassall, Jacob Dehinsilu, Ravneet K. Bhuller, Georgina Louise Hold, Xabier Vázquez-Campos, +84 more
16citations -
Comparing DNA Isolation and Preparation Protocols for Dried Blood Spots in the Context of Genomic Newborn Screening2025 International Journal of Neonatal Screening article Biochemistry, Genetics and Molecular Biology Metabolism and Genetic Disorders Open access
Annelotte J. Duintjer, Sandra Imholz, Ingrid Pico‐Knijnenburg, Adinda Heuperman, Hennie M. Hodemaekers, Eva S. Deutekom, +3 more
4citations -
The influence of intraspecific sequence variation during DNA metabarcoding: A case study of eleven fungal species2021 Molecular Ecology Resources article Environmental Science Environmental DNA in Biodiversity Studies Open access
Eva Lena F. Estensmo, Sundy Maurice, Luís Neves Morgado, Pedro Maria Martin-Sanchez, Inger Skrede, Håvard Kauserud
80citations -
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Angie S. Hinrichs, Lily Karim, Bethany L. Dearlove, Jeff Knaggs, Bede Constantinides, Philip William Fowler, +14 more
19citations -
Profiling of the tumor-associated microbiome in patients with hepatocellular carcinoma2025 Gut Pathogens article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Ramiro Vilchez‐Vargas, Elif Öcal, Nadine Koch, Daniel Puhr‐Westerheide, Lu Fornés Burnell, Heidrun Hirner-Eppeneder, +9 more
7citations -
Seasonal assessment of the structural and functional potential of microbial communities in a full-scale treatment wetland for combined sewer overflows2026 Ecological Engineering article Environmental Science Constructed Wetlands for Wastewater Treatment Open access
Katharina Tondera, Sarah J. Wallace, Jan P. Ruppelt, Mark Button, Kela P. Weber
0citations -
Multi-compartment impact of micropollutants and particularly antibiotics on bacterial communities using environmental DNA at river basin-level2024 Environmental Pollution article Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Pedro A. Inostroza, Gerdhard L Jessen, Feilong Li, Xiaowei Zhang, Werner Brack, Thomas Backhaus
13citations -
Investigation of Adiposity Measures and Operational Taxonomic unit (OTU) Data Transformation Procedures in Stool Samples from a German Cohort Study Using Machine Learning Algorithms2020 Microorganisms article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Martina Troll, Stefan Brandmaier, Sandra Reitmeier, Jonathan Adam, Sapna Sharma, Alice Sommer, +7 more
4citations