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Complementary Use of Cultivation and High-Throughput Amplicon Sequencing Reveals High Biodiversity Within Raw Milk Microbiota2020 Frontiers in Microbiology article Agricultural and Biological Sciences Milk Quality and Mastitis in Dairy Cows Open access
Franziska Breitenwieser, Etienne V. Doll, Thomas Clavel, Siegfried Scherer, Mareike Wenning
37citations -
Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach2023 ISME Communications article Environmental Science Microbial Community Ecology and Physiology Open access
Xinming Xu, Lasse Johan Dyrbye Nielsen, Lijie Song, Gergely Maróti, Mikael Lenz Strube, Ákos T. Kovács
21citations -
Enhanced specificity of Bacillus metataxonomics using a tuf -targeted amplicon sequencing approach2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Microbial Community Ecology and Physiology Open access
Xinming Xu, Lasse Johan Dyrbye Nielsen, Lijie Song, Gergely Maróti, Mikael Lenz Strube, Ákos T. Kovács
0citations -
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Deep-amplicon sequencing of the complete beta-tubulin gene in Trichuris trichiura before and after albendazole treatment2024 International Journal for Parasitology Drugs and Drug Resistance article Immunology and Microbiology Parasites and Host Interactions Open access
Javier Gandasegui, Berta Grau-Pujol, Valdemiro Novela, Osvaldo Muchisse, María Cambra-Pellejà, Anélsio Cossa, +9 more
3citations -
Epigenetic age-predictions in mice using pyrosequencing, droplet digital PCR or barcoded bisulfite amplicon sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Yang Han, Miloš Nikolić, Michael Gobs, Julia Franzen, Gerald de Haan, Hartmut Geiger, +1 more
0citations -
Multicenter In-House Evaluation of an Amplicon-Based Next−Generation Sequencing Panel for Comprehensive Molecular Profiling2025 Molecular Diagnosis & Therapy article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Eloisa Jantus Lewintre, Alessandra Rappa, Dina Ruano, Demi van Egmond, Sandra Gallach, Dilce Gozuyasli, +7 more
7citations -
Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics2021 mSystems article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Vittorio Tracanna, Adam Ossowicki, Marloes L. C. Petrus, Sam Overduin, Barbara R. Terlouw, George Lund, +7 more
56citations -
219P Multicentric evaluation of amplicon-based next-generation sequencing solution for local comprehensive molecular tumor profiling2023 Annals of Oncology article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Eloisa Jantus Lewintre, Alessandra Rappa, Dina Ruano, S. Gallach Garcia, Ludovic Lacroix, Karl Kashofer, +2 more
0citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
0citations -
Consensus calling of MinION amplicon reads improves metabarcoding results2020 Zenodo (CERN European Organization for Nuclear Research) dataset Environmental Science Environmental DNA in Biodiversity Studies Open access
Heleen Bouwer, Arjen G. C. L. Speksnijder, Rutger Aldo Vos, Elza J. Duijm
0citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2021 ISME Communications article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sandra Reitmeier, Thomas C. A. Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, +5 more
181citations -
Targeted VNTR long read sequencing resolves a diagnostic bottleneck in ADTKD and detects de novo ADTKD-MUC12026 Kidney International article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Andrea Wenzel, Björn Reusch, Karl Xaver Knaup, Nikola Zagorec, Margareta Fištrek Prlić, Kerstin Becker, +8 more
1citations -
Meta-analysis reveals microbiome signatures for colorectal cancer that are universal across age groups and sequencing methods2026 Cell Host & Microbe review Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Selin Pekel, Nicolai Karcher, Morgan Essex, Fabian Springer, Stefano Romano, Quinten R. Ducarmon, +6 more
7citations -
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling2020 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access
Sandra Reitmeier, Thomas CA Hitch, Nikolaos Fikas, Bela Hausmann, Amanda E. Ramer‐Tait, Klaus Neuhaus, +4 more
8citations -
A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-22023 European Journal of Clinical Microbiology & Infectious Diseases article Medicine SARS-CoV-2 detection and testing Open access
Ellen C. Carbo, Kees Mourik, Stefan A. Boers, Bas B. Oude Munnink, David F. Nieuwenhuijse, Marcel Jonges, +10 more
33citations -
Handling of Spurious Sequences Affects the Outcome of High-Throughput 16S rRNA Gene Amplicon Profiling2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Thomas Clavel, Sandra Reitmeier, Thomas CA Hitch, Nicole Simone Treichel, Nikolaos Fikas, Bela Hausmann, +5 more
7citations -
Immunohistochemistry and Next-generation Sequencing Are Complementary Tests in Identifying PTEN Abnormality in Endometrial Carcinoma Biopsies2021 International Journal of Gynecological Pathology article Medicine Endometrial and Cervical Cancer Treatments
Linyuan Wang, Anna Piskorz, Tjalling Bosse, Mercedes Jimenez‐Liñan, Brian Rous, C. Blake Gilks, +3 more
17citations -
DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study2025 mSystems article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Matthew T. F. Lamaudière, Jack Hassall, Jacob Dehinsilu, Ravneet K. Bhuller, Georgina Louise Hold, Xabier Vázquez-Campos, +84 more
16citations -
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Martin Hunt, Angie S. Hinrichs, Lily Karim, Bethany L. Dearlove, Jeff Knaggs, Bede Constantinides, +86 more
17citations