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The Impact of Digital Histopathology Batch Effect on Deep Learning Model Accuracy and Bias2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Frederick Matthew Howard, James M. Dolezal, Sara E. Kochanny, Jefree J. Schulte, Heather Chen, Lara Rosaline Heij, +7 more
25citations -
DEEP LEARNING APPROACH FOR RENAL CELL CARCINOMA DETECTION, SUBTYPING, AND GRADING2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Maroof Abdul Aziz, Fatemeh Javadian, Sherin Susheel Mathew, Gopal Avinash, Johannes Stegmaier, Abin Jose
0citations -
Benchmarking Variational AutoEncoders on cancer transcriptomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
4citations -
Methylation-Guided Stratification of Colorectal Cancer Reveals Immune Subtypes with Distinct Clinical Outcomes2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation
Eiman I. Ahmed, Raghvendra Mall, Christophe Michel Raynaud, Heba Saadeh, Shimaa Sherif, Rania Alanany, +4 more
0citations -
Foundation-model-guided radiogenomic discovery linking cancer genomes to cancer scans2026 arXiv (Cornell University) preprint Medicine Radiomics and Machine Learning in Medical Imaging Open access
Frederik Hauke, Jeremias Krause, Patrick Wienholt, Christiane Kuhl, Ingo Kurth, Sikander Hayat, +3 more
0citations -
Predicting clinical drug response from model systems by non-linear subspace-based transfer learning2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Soufiane M. C. Mourragui, Marco Loog, Daniël J. Vis, Kat S Moore, Anna G. Manjón, Mark A. van de Wiel, +2 more
9citations -
Self-Supervised Learning Reveals Clinically Relevant Histomorphological Patterns for Therapeutic Strategies in Colon Cancer2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access cited by 1 patent
Bojing Liu, Meaghan Polack, Nicolas Coudray, Adalberto Claudio Quiros, Theodore Sakellaropoulos, A. Stijn L. P. Crobach, +5 more
8citations -
SPAG6 promotes cell migration and induces epithelial-to-mesenchymal transition in luminal breast cancer cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jolein Mijnes, Sarah Bringezu, Carmen Schalla, Michael Rose, Sonja von Serényi, Ruth Knüchel‐Clarke, +2 more
4citations -
Proteogenomic and observational evidence implicate ANGPTL4 as a potential therapeutic target for colorectal cancer prevention2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Cancer, Lipids, and Metabolism Open access
James Yarmolinsky, Matthew A. Lee, Evelyn Lau, Ferrán Moratalla-Navarro, Emma E. Vincent, Ruifang Li‐Gao, +21 more
1citations -
KIF23 regulation by miR-107 controls replicative tumor cell fitness in mouse and human hepatocellular carcinoma2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Sanchari Roy, Carolin Lohr, Rossella Pellegrino, Mihael Vucur, Michael T. Singer, Veronika Buettner, +7 more
0citations -
The NLRP1 inflammasome emerges as a promising therapeutic target and prognostic biomarker across multiple cancer types: A comprehensive pan-cancer analysis2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Inflammasome and immune disorders Open access
Leila Habibipour, Mahboubeh Sadeghi, Alireza Raghibi, Amirhossein Mohajeri Khorasani, Pegah Mousavi, Nima Sanadgol
0citations -
Identification of a novel pyroptosis related long noncoding RNA subtypes, development of a prognostic model and characteristics of the tumor microenvironment in gastric cancer0citations
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Lack of detectable neoantigen depletion in treatment-naïve cancers2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Maarten Slagter, Lorenzo F. Fanchi, Marit M. van Buuren, Arno Velds, Gergana Bounova, Lodewyk F.A. Wessels, +1 more
0citations -
Melanin enhances metastatic melanoma colonization by inhibiting ferroptosis2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Ferroptosis and cancer prognosis Open access
Arwin Groenewoud, Gangyin Zhao, Maria Chiara Gelmi, Jie Yin, Gerda E. M. Lamers, Remco van Doorn, +4 more
0citations -
Comparative phosphoproteome analysis of primary and metastatic uveal melanoma cell lines2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Ocular Oncology and Treatments Open access
Kseniya Glinkina, Román González‐Prieto, Amina F.A.S. Teunisse, Maria Chiara Gelmi, Martine Johanna Jager, Alfred C.O. Vertegaal, +1 more
0citations