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Direct RNA sequencing enables improved transcriptome assessment and tracking of RNA modifications for medical applications2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology RNA modifications and cancer Open access
Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, Johannes H. Friedrich, Stephan Weißbach, Laura Holthöfer, +15 more
20citations -
Direct RNA sequencing enables improved transcriptome assessment and tracking of RNA modifications for medical applications2025 Research Square preprint Biochemistry, Genetics and Molecular Biology RNA modifications and cancer Open access
Susanne Gerber, Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, Stephan Weißbach, Johannes H. Friedrich, +14 more
1citations -
Defining the variety of cell types in developing and adult human kidneys by single-cell RNA sequencing2021 npj Regenerative Medicine article Biochemistry, Genetics and Molecular Biology Renal and related cancers Open access
Anika Schumacher, Maarten B. Rookmaaker, Jaap A. Joles, Rafael Kramann, Tri Quang Nguyen, Martijn van Griensven, +1 more
59citations -
Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing2020 Communications Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Patrick S. Stumpf, Haruka Imanishi, Yuya Kunisaki, Yuichiro Semba, Timothy J. Noble, Rosanna C. G. Smith, +8 more
38citations -
GraphHDBSCAN*: Graph-based Hierarchical Clustering on High Dimensional Single-cell RNA Sequencing Data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Seyed Ardalan Ghoreishi, Aleksandra Szmigiel, James Shiniti Nagai, Ivan G. Costa, Arthur Zimek, Ricardo J. G. B. Campello
0citations -
Benchmarking Imputation Methods for Single-Cell RNA Sequencing Data Using Peripheral Blood Mononuclear Cells from Acute Myocardial Infarction Patients0citations
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On the benchmarking of clustering algorithms and hyperparameter influence for cell type detection in single-cell RNA sequencing data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Aleksandra Szmigiel, Ivan G. Costa, Ricardo J. G. B. Campello
1citations -
Encompassing view of spatial and single-cell RNA sequencing renews the role of the microvasculature in human atherosclerosis2024 Nature Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Tore Bleckwehl, Anne Babler, Merel Tebbens, Sidrah Maryam, Michael Nyberg, Markus Høybye Bosteen, +12 more
68citations -
GraphComm predicts cell cell communication using a graph based deep learning method in single cell RNA sequencing data2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Emily So, Sikander Hayat, Sisira Kadambat Nair, Bo Wang, Benjamin Haibe‐Kains
6citations -
Single-nucleus RNA sequencing: immature excitatory neurons and transformed glia build human BRAFV600E-negative gangliogliomas2025 Brain Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Silvia Cases‐Cunillera, Philipp Müller, Ashley J. Waardenberg, Susanne Schoch, Gilles Huberfeld, Anke Höllig, +4 more
2citations -
Human and murine single-cell RNA-sequencing reveal fibroblast heterogeneity in healthy and diseased vasculature and differential regulation by ageing and serum cholesterol2023 Atherosclerosis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Kim van Kuijk, Ian R McCracken, Renée J. H. A. Tillie, S. Asselberghs, Dlzar Ali Kheder, Stan Muitjens, +21 more
0citations -
Unraveling Divergent Transcriptomic Profiles: A Comparative Single-Cell RNA Sequencing Study of Epithelium, Gingiva, and Periodontal Ligament Tissues12citations
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RNA Sequencing Reveals Interacting Key Determinants of Osteoarthritis Acting in Subchondral Bone and Articular Cartilage: Identification of IL11 and CHADL as Attractive Treatment Targets
Margo Tuerlings, Marcella van Hoolwerff, Evelyn Houtman, H. Eka D. Suchiman, Nico Lakenberg, Hailiang Mei, +5 more
69citations -
Cross-species single-cell RNA sequencing reveals divergent phenotypes and activation states of adaptive immunity in human carotid and experimental murine atherosclerosis2024 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Hauke Horstmann, Nathaly Anto Michel, Sophie Hansen, Alexandra Lindau, Katharina Pfeil, Marbely C. Fernández, +27 more
36citations -
Persistent transcriptional changes in cardiac adaptive immune cells following myocardial infarction: New evidence from the re-analysis of publicly available single cell and nuclei RNA-sequencing data sets2024 Journal of Molecular and Cellular Cardiology article Medicine Cardiac Fibrosis and Remodeling Open access
Natasha de Winter, Jiahui Ji, Amalia Sintou, Elvira Forte, Michael Man-Kit Lee, Michela Noseda, +8 more
12citations -
Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis2020 Cell Metabolism article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access
Kateřina Rohlenová, Jermaine Goveia, Melissa García‐Caballero, Abhishek Subramanian, Joanna Maria Kalucka, Lucas Treps, +33 more
336citations