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Single cell ATAC-seq Mouse Kidney Data: Chromatin-accessibility estimation from single-cell ATAC data with scOpen2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Zhijian Li, Christoph Kuppe, Susanne Maria Ziegler, Mingbo Cheng, Nazanin Kabgani, Sylvia Menzel, +3 more
0citations -
Single cell ATAC-seq Mouse Kidney Data: Chromatin-accessibility estimation from single-cell ATAC data with scOpen2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Zhijian Li, Christoph Kuppe, Susanne Maria Ziegler, Mingbo Cheng, Nazanin Kabgani, Sylvia Menzel, +3 more
0citations -
Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen2021 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Zhijian Li, Christoph Kuppe, Susanne Maria Ziegler, Mingbo Cheng, Nazanin Kabgani, Sylvia Menzel, +3 more
141citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Edinburgh Research Explorer (University of Edinburgh) dataset Medicine Chronic Kidney Disease and Diabetes Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
2citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Chronic Kidney Disease and Diabetes Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
0citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Mapping the Molecular Atlas of Podocyte Response to Glucocorticoids Using Multi-Omics Analyses2023 Journal of the American Society of Nephrology conference-abstract Medicine Renal Diseases and Glomerulopathies
Martijn van den Broek, Bartholomeus T. van den Berge, Michiel F. Schreuder, Bart Smeets, Jitske Jansen
0citations -
Resolving Temporally Ambiguous Relationships between Single-Nucleus Multimodal Sequencing Derived Cell Populations2025 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rick Mulders, Mathew Nickel Maunu, Rodrigo Coutinho de Almeida, Marcella van Hoolwerff, H. Eka D. Suchiman, Yavuz Ariyürek, +3 more
0citations -
Targeting the 3D genome by anthracyclines for chemotherapeutic effects2025 Proceedings of the National Academy of Sciences article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Minkang Tan, Yuchen Liu, Andrea A. Perreault, Douglas H. Phanstiel, Liping Dou, Baoxu Pang
2citations -
Targeting the 3D genome by anthracyclines for chemotherapeutic effects2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Minkang Tan, Yuchen Liu, Andrea A. Perreault, Douglas H. Phanstiel, Liping Dou, Baoxu Pang
2citations -
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors2021 Journal of Experimental Botany article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolás Manosalva Pérez, Wenbin Guo, Bruno Pok Man Ngou, +7 more
40citations -
Transcriptional activation of Jun and Fos members of the AP‐1 complex is a conserved signature of immune aging that contributes to inflammaging2023 Aging Cell article Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Emin Onur Karakaslar, Neerja Katiyar, Muneer G. Hasham, Ahrim Youn, Siddhartha Sharma, Cheng‐Han Chung, +4 more
98citations -
Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Emin Onur Karakaslar, Neerja Katiyar, Muneer G. Hasham, Ahrim Youn, Siddhartha M. Sharma, Cheng‐Han Chung, +4 more
6citations -
The role of MORC3 in silencing transposable elements in mouse embryonic stem cells2021 Epigenetics & Chromatin article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Jihed Chouaref, Haoyu Wu, William A. Pastor, Ryan L. Kan, Harald Oey, Zheng Li, +7 more
30citations