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Neuronal polyunsaturated fatty acids are protective in FTD/ALS2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Amyotrophic Lateral Sclerosis Research Open access
Ashling Giblin, Alexander J. Cammack, Nienke J. Blomberg, Alla Mikheenko, Mireia Carcolé, Rachel Coneys, +11 more
6citations -
Roles for the long non-coding RNA Pax6os1 / PAX6-AS1 in pancreatic beta cell identity and function2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Livia López–Noriega, Rebecca Callingham, Aida Martínez-Sánchez, Sameena Nawaz, Grazia Pizza, Nejc Haberman, +13 more
6citations -
A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations -
Encompassing view of spatial and single-cell RNA-seq renews the role of the microvasculature in human atherosclerosis2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Tore Bleckwehl, Sidrah Maryam, Anne Babler, Michael Nyberg, Markus Høybye Bosteen, Maurice Halder, +8 more
5citations -
Latent plasticity of the human pancreas across development, health, and disease2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Elisabetta Mereu, Diego Balboa, Johannes Liebig, A. Herrero, Anna Martinez Casals, Mariya Mardamshina, +37 more
5citations -
Cross-species analyses reveal RORγt-expressing dendritic cells are a lineage of antigen presenting cells conserved across tissues2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access cited by 3 patents
Hamsa Narasimhan, Maria Lucia Richter, Ramin Shakiba, Nikos E. Papaioannou, Christina Stehle, Isabel Ulmert, +12 more
5citations -
Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Laura G.M. Heezen, Tamim Abdelaal, Maaike van Putten, Annemieke M Aartsma-Rus, Ahmed Essam Mahfouz, Pietro Spitali
5citations -
EOMES and IL-10 regulate anti-tumor activity of PD-1 + CD4 + T-cells in B-cell Non-Hodgkin lymphoma2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Philipp M. Roessner, Laura Llaó Cid, Ekaterina Lupar, Tobias Roider, Marie Bordas, Christoph Schifflers, +10 more
4citations -
Cell-type-specific execution of effector-triggered immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Himanshu Chhillar, Leonardo Jo, Amey Redkar, Kaisa Kajala, Jonathan D. G. Jones, Pingtao Ding
4citations -
RNA genome expansion up to 64 kb in nidoviruses is host constrained and associated with new modes of replicase expression2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Animal Virus Infections Studies Open access
Benjamin W. Neuman, Alexandria Smart, Josef Vaas, Ralf F. W. Bartenschlager, Stefan Seitz, Alexander E. Gorbalenya, +2 more
4citations -
MMR vaccination induces a trained immunity program characterized by functional and metabolic reprogramming of γδ T cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune responses and vaccinations
Rutger Jan Röring, Priya A. Debisarun, Javier Botey-Bataller, Tsz Kin Suen, Ozlem Pinar Bulut, Gizem Kılıç, +19 more
4citations -
Establishment and characterization of a new Pseudomonas aeruginosa infection model using 2D airway organoids and dual RNA sequencing2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial biofilms and quorum sensing Open access
Cayetano Pleguezuelos‐Manzano, Wouter A. G. Beenker, Gijs J. F. van Son, Harry Begthel, Gimano D. Amatngalim, Jeffrey Matthijn Beekman, +2 more
4citations -
Capture of Post-Pluripotency Human Neuromesodermal and Neural Tube Axial Stem Cell States2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Dolunay Kelle, Enes Ugur, Ejona Rusha, Dmitry Shaposhnikov, Alessandra Livigni, Sandra Horschitz, +16 more
4citations -
Benchmarking Variational AutoEncoders on cancer transcriptomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
4citations -
mcBERT: Patient-Level Single-cell Transcriptomics Data Representation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, +1 more
3citations -
Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo Ramirez Flores, Hyojin Kim, +5 more
3citations -
Spatial patterning of transcriptional and regulatory programs in the primate subcortex2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shu Dan, Meghan A. Turner, Michael DeBerardine, Lakme Caceres, Victor E. Nieto-Caballero, Jessica Schembri, +28 more
2citations -
Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Jiangzhao Qian, Heba M. M. Ibrahim, Myriam Erz, Florian Kümmel, Ralph Panstruga, Stefan Kusch
2citations -
Loss of myeloid cannabinoid CB1 receptor confers atheroprotection by reducing macrophage proliferation and immunometabolic reprogramming2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Yong Wang, Li Guo, Bingni Chen, George Shakir, Mario Volz, Emiel P. C. van der Vorst, +14 more
2citations -
Distinct regulatory networks control toxin gene expression in elapid and viperid snakes2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Venomous Animal Envenomation and Studies Open access
Cassandra Marie Modahl, Summer Xia Han, Jory van Thiel, Candida Vaz, Nathan L. Dunstan, Seth E. Frietze, +3 more
2citations -
High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Maarten Punt, Sjoerd J. Seekles, Jisca L. van Dam, Connor de Adelhart Toorop, Raithel R. Martina, Jos A. M. P. Houbraken, +3 more
2citations