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KIF23 regulation by miR-107 controls replicative tumor cell fitness in mouse and human hepatocellular carcinoma2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Sanchari Roy, Carolin Lohr, Rossella Pellegrino, Mihael Vucur, Michael T. Singer, Veronika Buettner, +7 more
0citations -
Single-cell characterization of human periodontal ligament (PDL) cells reveals uniformly mesenchymal populations in matched maxilla and mandible pairs from four donors2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Periodontal Regeneration and Treatments Open access
Chloé Radermacher, Robert Dzhanaev, Christian Hasberg, Sabine Neuß-Stein, Andrea Gorgels, Julia Moellmann, +8 more
0citations -
Spatial multi-omics reveals targetable immunosuppressive macrophage T-cell interactions in human AML bone marrow2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access
Merel van der Meulen, Emma S. Pool, Alicia Perzolli, Joost B. Koedijk, Eva M. Argiro, Li‐Ting Chen, +18 more
0citations -
How different is similar – exploring development of Ceropegia sandersonii pitfall flowers to elucidate convergent evolution of floral synorganization2020 Research Square preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Annemarie Heiduk, Dewi Pramanık, Marlies Spaans, Loes Gast, Nemi Dorst, Monique C. M. Welten, +1 more
0citations -
Fast model-free standardization and integration of single-cell transcriptomics data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Rafael Kramann, Rachel Patton McCord, Sikander Hayat
0citations -
Mechanotranscriptomic Profiling of Breast Cancer Cells Intravasated from Engineered Microtumors2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
René Krüger, Miguel Fuentes‐Chandía, Helly Atiya, Angeles De La Cruz, Sadaf Pashapour, Aldo Roberto Boccaccini, +5 more
0citations -
Atherosclerotic plaque iron accumulation characterizes a distinct phase of intra-plaque haemorrhage and is associated with inflammation and remodelling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Elias B Wieland, Aniek Plug, Benjamin Balluff, Marion J. Gijbels, Lele Han, Bryn Flinders, +7 more
0citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
28citations -
Comparative transcriptomics reveals human-specific cortical features2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nikolas L. Jorstad, Janet H. T. Song, David Exposito-Alonso, Hamsini Suresh, Fenna M. Krienen, Anna Marie Yanny, +35 more
24citations -
Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo O. Ramirez Flores, Hyojin Kim, +5 more
23citations -
GraphComm: A Graph-based Deep Learning Method to Predict Cell-Cell Communication in single-cell RNAseq data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Emily So, Sikander Hayat, Sisira Kadambat Nair, Bo Wang, Benjamin Haibe‐Kains
13citations -
Spatiotemporal heterogeneity of glioblastoma is dictated by microenvironmental interference2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Vidhya Madapusi Ravi, Paulina Will, Jan Kueckelhaus, Na Sun, Kevin Joseph, Henrike Salié, +20 more
12citations -
Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
German Preciat, Agnieszka B. Wegrzyn, Edinson Lucumi Moreno, Cornelius C.W. Willacey, Jennifer Modamio, Fátima Liliana Monteiro, +18 more
12citations -
Lineage and Spatial Mapping of Glioblastoma-associated Immunity2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Vidhya Madapusi Ravi, Nicolas Noel Neidert, Paulina Will, Kevin Joseph, Julian P. Maier, Jan Kückelhaus, +20 more
12citations -
Epigenetic neural glioblastoma enhances synaptic integration and predicts therapeutic vulnerability2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Richard Drexler, Robin Khatri, Thomas Sauvigny, Malte Mohme, Cécile L. Maire, Alice Senta Ryba, +36 more
10citations -
2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Sebastian Tiesmeyer, Niklas Müller‐Bötticher, Sergio Marco Salas, Paul Kießling, Paul M. Horn, Adrien Guillot, +7 more
9citations -
Systematic analysis of snRNA genes reveals frequent RNU2-2 variants in dominant and recessive developmental and epileptic encephalopathies2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetics and Neurodevelopmental Disorders Open access
Elsa Leitão, Benjamin Cogné, Miriam Essid, Maria Athanasiadou, Christy W. LaFlamme, Pierre Marijon, +88 more
9citations -
Characterization of the human fetal rete region by single cell transcriptional analysis of gonads and mesonephros/epididymis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Sperm and Testicular Function Open access
Jasin Taelman, Sylwia M. Czukiewska, Ioannis Moustakas, Yolanda W. Chang, Sanne Hillenius, Talia van der Helm, +3 more
8citations -
Immunogenomic, single-cell and spatial dissection of CD8 + T cell exhaustion reveals critical determinants of cancer immunotherapy2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Stefan Naulaerts, Daniel Borràs, Asier Antoranz, Julie Messiaen, Yannick Van Herck, Lendert Gelens, +15 more
7citations -
Lifespan prolonging mechanisms and insulin upregulation without fat accumulation in long-lived reproductives of a higher termite2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Sarah Séité, Mark C. Harrison, David Sillam‐Dussès, Roland Lupoli, Tom J. M. Van Dooren, Alain Robert, +10 more
7citations -
Structure and Function Relationships of Mucociliary Clearance in Human and Rat Airways2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cystic Fibrosis Research Advances Open access
Ayşe Tuğçe Şahin, Feng Ling, Niels Tepho, Christiana N. Senger, Erik J. Quiroz, Ben A. Calvert, +9 more
6citations -
Hao-Fountain syndrome protein USP7 controls neuronal differentiation via BCOR–ncPRC1.12025 Genes & Development preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Joyce Wolf van der Meer, Axelle Larue, Jan A. VAN DER KNAAP, Gillian E. Chalkley, Ayestha Sijm, Leila Beikmohammadi, +14 more
6citations -
Roles for the long non-coding RNA Pax6os1 / PAX6-AS1 in pancreatic beta cell identity and function2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Livia López–Noriega, Rebecca Callingham, Aida Martínez-Sánchez, Sameena Nawaz, Grazia Pizza, Nejc Haberman, +13 more
6citations