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Integrating Functional Genomic Descriptors into Explainable Machine-Learning Models for Cross-Aquatic Species Prediction of Metal-Containing Nanomaterials Ecotoxicity2026 Environmental Science & Technology Letters article Environmental Science Environmental Toxicology and Ecotoxicology
Yunchi Zhou, Ying Wang, Willie J.G.M. Peijnenburg, Martina G. Vijver, Kmy Leung, Surendra Balraadjsing, +3 more
0citations -
The Aachen Protocol for Deep Learning Histopathology: A hands-on guide for data preprocessing2020 Zenodo (CERN European Organization for Nuclear Research) article Computer Science AI in cancer detection Open access
Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Lara Rosaline Heij, Roman David Buelow, Jeremias Krause, +8 more
29citations -
Neuromuscular disease genetics in under-represented populations: increasing data diversity2023 Brain article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Lindsay A. Wilson, William L. Macken, Luke Perry, Christopher J. Record, Katherine R. Schon, Rodrigo Siqueira Soares Frezatti, +72 more
31citations -
Reliable Genomic Integration Sites in Pseudomonas putida Identified by Two-Dimensional Transcriptome Analysis2024 ACS Synthetic Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 1 patent
Sebastian Köbbing, Thorsten Lechtenberg, Benedikt Wynands, Lars M. Blank, Nick J. P. Wierckx
11citations -
Mutational constraint analysis workflow for overlapping short open reading frames and genomic neighbors2025 BMC Genomics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, Jeremias Krause
0citations -
Mutational Constraint Analysis Workflow for Overlapping Short Open Reading Frames and Genomic Neighbours2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Florian Kraft, Miriam Elbracht, Ingo Kurth, Jeremias Krause
0citations -
Human-lineage-specific genomic elements are associated with neurodegenerative disease and APOE transcript usage2021 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Zhongbo Chen, David Zhang, Regina Hertfelder Reynolds, Emil Karl Gustavsson, Sonia García-Ruiz, Karishma D’Sa, +93 more
23citations -
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, Roman David Bülow, Christoph Kuppe, David Laurin Hölscher, Mingbo Cheng, +9 more
8citations -
NewtCap : An Efficient Target Capture Approach to Boost Genomic Studies in Salamandridae (True Salamanders and Newts)2025 Ecology and Evolution article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Manon Chantal de Visser, James France, Evan McCartney‐Melstad, Gary M. Bucciarelli, Anagnostis Theodoropoulos, Howard Bradley Shaffer, +1 more
15citations -
NewtCap: an efficient target capture approach to boost genomic studies in Salamandridae (true salamanders and newts)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Manon Chantal de Visser, James France, Evan McCartney‐Melstad, Gary M. Bucciarelli, Anagnostis Theodoropoulos, Howard Bradley Shaffer, +1 more
10citations -
PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data2021 Journal of Proteome Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Enio Gjerga, Aurélien J. F. Dugourd, Luis Tobalina, Abel Sousa, Julio Sáez-Rodríguez
32citations -
Dynamic data-driven meta-analysis for prioritisation of host genes implicated in COVID-192020 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Nick Parkinson, Natasha Rodgers, Max Head Fourman, Bo Wang, Marie Zechner, Maaike C. Swets, +5 more
50citations -
Cross-Ancestry Investigation of Venous Thromboembolism Genomic Predictors2022 Circulation article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Florian Thibord, Derek M. Klarin, Jennifer A. Brody, Ming‐Huei Chen, Michael G. Levin, Daniel I. Chasman, +81 more
105citations -
Clinical-genomic determinants of immune checkpoint blockade response in head and neck squamous cell carcinoma2023 Journal of Clinical Investigation article Medicine Cancer Immunotherapy and Biomarkers Open access
Cristina Valero, Mahdi Golkaram, Joris L. Vos, Bin Xu, Conall W. R. Fitzgerald, Mark Andrew Lee, +16 more
31citations -
Genomic investigations in animal enteric disease-associated Clostridium perfringens2025 Microbial Genomics article Medicine Clostridium difficile and Clostridium perfringens research Open access
Jan Franzen, Martin F. Larralde, Ana Cristina Campal Espinosa, Sonja Kittl, Simon Feyer, Isabelle Brodard, +9 more
3citations -
Recommendations for the analysis of gene expression data to identify intrinsic differences between similar tissues2020 Genomics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Tooba Abbassi‐Daloii, Hermien E. Kan, Vered Raz, Peter A.C. ’t Hoen
16citations -
Mutually exclusive genetic interactions and gene essentiality shape the genomic landscape of primary melanoma2022 The Journal of Pathology article Biochemistry, Genetics and Molecular Biology Melanoma and MAPK Pathways Open access
Sofia Birkeälv, Mark Harland, Larissa Satiko Alcântara Sekimoto Matsuyama, Ishan Mehta, Jonathan P. Laye, Kerstin Haase, +11 more
16citations