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CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2021 Genome Medicine article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
10citations -
Global Transcriptome Analysis Reveals Distinct Phases of the Endothelial Response to TNF2023 The Journal of Immunology article Immunology and Microbiology interferon and immune responses Open access
Eike C. Struck, Tatiana Belova, Ping‐Han Hsieh, Jacob Odeberg, Marieke L. Kuijjer, Philip Dusart, +1 more
5citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
4citations -
Direct RNA sequencing enables improved transcriptome assessment and tracking of RNA modifications for medical applications2025 Research Square preprint Biochemistry, Genetics and Molecular Biology RNA modifications and cancer Open access
Susanne Gerber, Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, Stephan Weißbach, Johannes H. Friedrich, +14 more
1citations -
Mapping the glial transcriptome in Huntington’s disease using snRNAseq: Selective disruption of glial signatures across brain regions2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Genetic Neurodegenerative Diseases Open access
Sunniva M. K. Bøstrand, Luise A. Seeker, Nina-Lydia Kazakou, Nadine Bestard-Cuche, Sarah Jäkel, Boyd Kenkhuis, +5 more
1citations -
Temporal transcriptome analysis of the endothelial response to tumour necrosis factor2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology interferon and immune responses Open access
EC Struck, Tatiana Belova, Ping‐Han Hsieh, Jacob Odeberg, Marieke L. Kuijjer, Philip Dusart, +1 more
0citations -
Additional file 1 of Transcriptome, metabolome and suppressor analysis reveal an essential role for the ubiquitin-proteasome system in seedling chloroplast development2022 Figshare dataset Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Prabhavathi Talloji, Lilian Nehlin, Bruno Hüttel, Nikola Winter, Martin Černý, Hana Dufková, +9 more
0citations -
Comprehensive lincRNA Transcriptome in Acute Myeloid Leukemia: Integrating Known and Newly Identified lincRNAs Across Pediatric and Adult Cohorts2026 Non-Coding RNA article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Saioa Arza-Apalategi, Daan Gilissen, Anne van der Grinten, Seline N. van den Oever, Erik B. van den Akker, Marieke Griffioen, +4 more
0citations -
Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information2020 Nature Communications article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Sebastian Guelfi, Karishma D’Sa, Juan Antonio Botía, Jana Vandrovcová, Regina Hertfelder Reynolds, David Zhang, +94 more
39citations -
The Hippocampal Response to Acute Corticosterone Elevation Is Altered in a Mouse Model for Angelman Syndrome2022 International Journal of Molecular Sciences article Neuroscience Stress Responses and Cortisol Open access
Eva M. G. Viho, A. Mattijs Punt, Ben Distel, René Houtman, Jan Kroon, Ype Elgersma, +1 more
8citations -
Identification of molecular toxicity pathways across early life-stages of zebrafish exposed to PCB126 using a whole transcriptomics approach2020 Ecotoxicology and Environmental Safety article Environmental Science Toxic Organic Pollutants Impact Open access
Henriette Meyer-Alert, Steve B. Wiseman, Song Tang, Markus Hecker, Henner Hollert
4citations -
Lipid-induced transcriptomic changes in blood link to lipid metabolism and allergic response2023 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Koen F. Dekkers, Roderick C. Slieker, Andreea Ioan‐Facsinay, Maarten van Iterson, M. Arfan Ikram, Marleen M. J. van Greevenbroek, +6 more
19citations -
OP0155 RA RISK GENES ARE DIFFERENTIALLY EXPRESSED BETWEEN (PEAC) PATHOTYPES IN SYNOVIUM WITH A CLEAR ENRICHMENT IN THE LYMPHOID-RICH PATHOTYPE2025 Annals of the Rheumatic Diseases conference-abstract Medicine Rheumatoid Arthritis Research and Therapies Open access
Inez C Den Hond, Marcel J. T. Reinders, Myles Lewis, Costantino Pitzalis, Rachel Knevel, Erik B. van den Akker
1citations -
A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Venomous Animal Envenomation and Studies Open access
Freek J. Vonk, Mátyás A. Bittenbinder, Harald M. I. Kerkkamp, Dwin G.B. Grashof, John Patrick Archer, Sandra Afonso, +3 more
8citations -
A combined lifestyle intervention induces a sensitization of the blood transcriptomic response to a nutrient challenge2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Nutrition, Genetics, and Disease Open access
Thies Gehrmann, Marian Beekman, Joris Deelen, Linda Partridge, Ondine van de Rest, Leon Mei, +6 more
5citations -
A Combined Lifestyle Intervention Induces a Sensitization of the Blood Transcriptomic Response to a Nutrient Challenge2024 article Biochemistry, Genetics and Molecular Biology Nutrition, Genetics, and Disease Open access
Thies Gehrmann, P. Eline Slagboom, Marian Beekman, Joris Deelen, Linda Partridge, Ondine van de Rest, +6 more
1citations -
Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity2023 Clinical and Translational Medicine article Medicine Tuberculosis Research and Epidemiology Open access
Clare Eckold, Cassandra L. R. van Doorn, Rovina Ruslami, Katharina Ronacher, Anca‐Lelia Riza, Suzanne van Veen, +19 more
8citations -
Transcriptomic Responses of Adult Versus Juvenile Atlantids to Ocean Acidification2022 Frontiers in Marine Science article Earth and Planetary Sciences Ocean Acidification Effects and Responses Open access
Paula Ramos‐Silva, Mari-Lee Odendaal, Deborah Wall-Palmer, Lisette Mekkes, Katja T. C. A. Peijnenburg
6citations