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Towards complete and error-free genome assemblies of all vertebrate species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Arang Rhie, Shane McCarthy, Olivier D. Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, +92 more
197citations -
Reliable Virtual Sensing: A Multi-Domain Benchmark for Robustness Under Sensor Failures2026 arXiv (Cornell University) preprint Engineering Fault Detection and Control Systems Open access
Jens U. Brandt, Noah C. Puetz, Alexander Windmann, Marc Hilbert, Elena Raponi, Thomas Bäck, +1 more
0citations -
Rational evolution of a recombinant DNA polymerase for efficient incorporation of unnatural nucleotides by dual-site boosting2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization Open access
Ruyin Cao, Lili Zhai, Qingqing Xie, Zi Wang, Yue Zheng, Wenwei Zhang, +5 more
0citations -
Cross-species consensus atlas of the primate basal ganglia2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nelson Johansen, Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan E. Wirthlin, +87 more
11citations -
A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations -
SCHNEL: Scalable clustering of high dimensional single-cell data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
2citations -
CellSium – Versatile Cell Simulator for Microcolony Ground Truth Generation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Christian Carsten Sachs, Karina Ruzaeva, Johannes Seiffarth, Wolfgang Wiechert, Benjamin Berkels, Katharina Nöh
1citations -
Live-cell imaging enables reporter-free monitoring of the circadian rhythm in individual Synechocystis cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Circadian rhythm and melatonin Open access
Lennart Witting, Florian Pascal Stirba, Julius Nohr, Petra Kolkhof, Dietrich Kohlheyer, Anika Wiegard, +1 more
0citations -
Cyst-type epithelial heterogeneity shapes therapeutic responsiveness in ADPKD2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access
Johannes Roeles, Axel Giesler, Jessica Schmitz, Johannes Koenig, Frank Friedersdorff, Jonas Busch, +18 more
0citations -
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ping‐Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien‐Yu Chen, +3 more
0citations