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Localized prediction of glutamate from whole-brain functional connectivity of the pregenual anterior cingulate cortex2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Louise Martens, Nils B. Kroemer, Vanessa Teckentrup, Lejla Čolić, Nicola Palomero‐Gallagher, Meng Li, +1 more
1citations -
Spatially-resolved tumour infiltrating immune cells and prognosis in breast cancer2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Aaron J. Bernstein, Renske Keeman, Amber N. Hurson, Fiona M. Blows, Manjeet K. Bolla, Jodi L. Miller, +57 more
0citations -
Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Elena Kratz, Ankit Sinha, Trusha Adeshara, Valentina Paloschi, Nadja Sachs, Jessica Pauli, +10 more
0citations -
Contact-tracing in cultural evolution: a Bayesian mixture model to detect geographic areas of language contact2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Social Sciences Language and cultural evolution Open access
Peter Ranacher, Nico Neureiter, Rik van Gijn, Barbara Sonnenhauser, Anastasia Escher, Robert Weibel, +2 more
42citations -
The proteomic landscape of proteotoxic stress in a fibrogenic liver disease2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Florian A. Rosenberger, Sophia Clara Mädler, Katrine Holtz Thorhauge, Sophia Steigerwald, Malin Fromme, Caroline A M Weiss, +13 more
2citations -
Nerve fibers in the Tumor Microenvironment are co-localized with Tertiary Lymphoid Structures2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic and Hepatic Oncology Research Open access
Lara Rosaline Heij, Xiuxiang Tan, Jakob Nikolas Kather, Jan Niehues, Shivan Sivakumar, Nicole Maria Heussen, +12 more
0citations -
Cross-species consensus atlas of the primate basal ganglia2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nelson Johansen, Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan E. Wirthlin, +87 more
11citations -
Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Xiao-Ping Liu, Rachel A. Dalley, Nelson Johansen, Agata Budzillo, Julian Thijssen, Jeremy A. Miller, +84 more
0citations -
A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations -
SCHNEL: Scalable clustering of high dimensional single-cell data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
2citations -
Mass cytometry data integration methods reveal rural-urban gradient of immune profiles across geography2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Koen A. Stam, Jeremia Jackson Pyuza, Mikhael D. Manurung, Dicky L. Tahapary, Taniawati Supali, Marloes M.A.R. van Dorst, +5 more
1citations -
LEGO Co-builder: Exploring Fine-Grained Vision-Language Modeling for Multimodal LEGO Assembly Assistants2025 arXiv (Cornell University) preprint Computer Science Multimodal Machine Learning Applications Open access
Hao‐Chen Huang, Y W Su, Xin Sun, Moonisa Ahsan, Mohammad Aliannejadi, Irene Viola, +8 more
1citations -
Inflammation-driven reprogramming of goblet cells underlies the onset of serrated adenomas in colon cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mathijs P. Verhagen, Emily Middendorp Guerra, Rosalie Joosten, Andrea Sacchetti, Wenjie Sun, Karishma Lila, +9 more
0citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ping‐Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien‐Yu Chen, +3 more
0citations