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Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics2026 iScience article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Sharon I. de Vries, L. Heezen, Ophélie Vacca, Mathilde Doisy, Annemieke M Aartsma-Rus, Maaike van Putten, +3 more
1citations -
Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data2025 IEEE Pacific Visualization Conference (PacificVis) conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Soumyadeep Basu, Morgan E. Wirthlin, Jeroen Eggermont, Thomas Kroes, Boudewijn P. F. Lelieveldt, Ed S. Lein, +2 more
1citations -
Multimodal analysis of vascular remodeling in human obliterative bronchiolitis after lung transplantation2026 American Journal of Transplantation article Medicine Transplantation: Methods and Outcomes Open access
Axelle Coppens, Rahel Bodenmann, Janik Riese, Huijuan Wang, Matthias Brunner, Mark Kuehnel, +22 more
1citations -
Immunomodulatory endothelial cells contribute to T cell recruitment and activation through antigen presentation on MHC class II2026 dissertation Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Matteo Cartura, Blerina Aliraj, Witold G. Szymanski, Giulio Ferrario, Flávia Rezende, Beyza Güven, +11 more
1citations -
Kynurenine and NAD+ Pathways are Associated with Macrophage Content and Polarization in Carotid Plaques2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Charlotte J. Teunis, Lobke F. Zijlstra, Johannes H.M. Levels, Kasper Tore Vinten, Maria M. Trętowicz, Barend M. Mol, +9 more
1citations -
The Lettuce Expression Browser: from lab to LEB2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Dirk‐Jan M. van Workum, Esther S. van den Bergh, Siddhant S. Shetty, Jelmer van Lieshout, Tao Feng, Marrit C. Alderkamp, +12 more
1citations -
Atherosclerotic plaque iron accumulation characterizes a distinct phase of intra-plaque haemorrhage and is associated with inflammation and remodelling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Elias B Wieland, Aniek Plug, Benjamin Balluff, Marion J. Gijbels, Lele Han, Bryn Flinders, +7 more
0citations -
Seed Ripening and Quinolizidine Alkaloid Dynamics in Lupinus mutabilis: From Gene Activity to Metabolite2026 JuSER Publikationsportal article Agricultural and Biological Sciences Botanical Research and Chemistry Open access
Philipp Sowa, Marco Loehrer, Jochem Gätgens, Mansi Singh, Anika Wiese‐Klinkenberg, Sebastian Beier, +4 more
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Longitudinal dynamics of human B-cell response at single-cell level in response to Tdap vaccination2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Indu Khatri, Annieck M. Diks, Erik B. van den Akker, Liesbeth E.M. Oosten, Jaap Jan Zwaginga, Marcel J. T. Reinders, +2 more
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Seed ripening and quinolizidine alkaloid dynamics in Lupinus mutabilis: from gene activity to metabolites2026 Frontiers in Natural Products article Agricultural and Biological Sciences Botanical Research and Chemistry Open access
Philipp Sowa, Marco Loehrer, Jochem Gätgens, Mansi Singh, Ashley Beers, Anika Wiese‐Klinkenberg, +5 more
0citations -
Correcting differential gene expression analysis for cyto-architectural alterations in substantia nigra of Parkinson’s disease patients reveals known and potential novel disease-associated genes and pathways2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Parkinson's Disease Mechanisms and Treatments Open access
Federico Ferraro, Fevga Christina, Bonifati Vincenzo, Mandemakers Wim, Mahfouz Ahmed, Reinders Marcel
0citations -
Eicosapentaenoic acid induces an anti-inflammatory transcriptomic landscape in T cells implicating a pathway independent of triglyceride lowering in cardiovascular risk reduction2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Nursing Fatty Acid Research and Health Open access
Nathalie A. Reilly, Koen F. Dekkers, Jeroen Molenaar, Sinthuja Arumugam, Thomas B. Kuipers, Yavuz Ariyürek, +3 more
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Phylotranscriptomics Reveals the Reticulate Evolutionary History of a Widespread Diatom Species Complex2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access
Ozan Çiftçi, Andrew James Alverson, Peter M. van Bodegom, Wade R. Roberts, Adrienne Mertens, Bart Van de Vijver, +5 more
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EchoGO validation and reproducibility compendium2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Camilo Escobar-Sierra, Felix Langschied, Angelina Miller, Pedro A. Inostroza
0citations -
Immune infiltration is linked to increased transcriptional activity and distinct metabolic profiles in chordomas2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Bone Tumor Diagnosis and Treatments Open access
Siddh van Oost, Rick Ursem, Zeynep Betül Erdem, Sanne Venneker, Ruud van der Breggen, Inge H. Briaire‐de Bruijn, +8 more
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KIF23 regulation by miR-107 controls replicative tumor cell fitness in mouse and human hepatocellular carcinoma2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Sanchari Roy, Carolin Lohr, Rossella Pellegrino, Mihael Vucur, Michael T. Singer, Veronika Buettner, +7 more
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Bi-allelic deleterious variants in SNAPIN, which encodes a retrograde dynein adaptor, cause a prenatal-onset neurodevelopmental disorder2025 The American Journal of Human Genetics article Medicine Fetal and Pediatric Neurological Disorders Open access
Hammad Yousaf, Maayke A. de Koning, Kamal Khan, Kelly L. Gilmore, Mariëtte J.V. Hoffer, Georgios Kellaris, +20 more
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How different is similar – exploring development of Ceropegia sandersonii pitfall flowers to elucidate convergent evolution of floral synorganization2020 Research Square preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Annemarie Heiduk, Dewi Pramanık, Marlies Spaans, Loes Gast, Nemi Dorst, Monique C. M. Welten, +1 more
0citations